genome.fa.s9636.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009636.1 Hibiscus syriacus cultivar Beakdansim tig00117040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  700957

Tables:   1   2   3   4   

This is table  2  of  4  ( 443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235141--235233	44	2.2	41	83	9	107	30	4	4	61	1.34
235183--235274	34	2.7	33	80	11	87	27	3	2	67	1.18
244575--244634	20	3.0	21	85	4	79	31	25	20	23	1.98
244689--244725	19	1.9	19	94	0	65	37	2	29	29	1.71
245156--245342	21	9.2	21	75	6	170	33	22	21	21	1.98
245156--245348	40	4.8	40	79	7	201	33	22	21	22	1.98
245195--245348	61	2.5	61	93	0	254	33	23	20	22	1.97
245231--245396	77	2.1	80	86	5	230	33	22	20	23	1.97
255737--255788	18	3.0	18	88	5	81	42	11	23	23	1.86
256078--256133	22	2.5	22	100	0	112	17	44	23	14	1.85
258054--258120	23	2.9	23	84	0	89	19	26	22	31	1.98
262234--262306	5	15.4	5	79	11	57	73	4	1	20	1.06
262229--262322	4	22.2	4	73	23	61	74	3	1	21	1.02
263051--263152	34	2.9	36	88	11	165	27	14	14	43	1.85
263700--264255	105	5.3	104	86	4	690	22	17	25	33	1.96
264859--265308	65	6.7	65	72	13	273	37	11	20	30	1.88
264991--265251	36	7.4	36	76	10	245	39	13	19	27	1.89
265023--265055	15	2.1	16	88	5	50	39	9	21	30	1.84
265003--265114	37	3.1	36	82	3	118	41	14	19	24	1.88
264940--265307	136	2.7	136	83	3	452	38	12	19	29	1.88
265027--265224	99	2.0	103	85	6	271	39	14	17	28	1.89
265133--265251	37	3.3	36	88	4	179	40	13	20	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266103--266157	22	2.5	22	96	0	101	25	12	25	36	1.91
266792--266884	9	9.7	9	73	18	64	3	15	3	78	1.01
266809--266881	23	3.1	24	79	20	75	1	15	4	79	0.95
269884--269971	12	6.9	12	69	15	52	76	3	2	18	1.04
269919--269971	15	3.6	14	83	16	63	79	0	1	18	0.83
269881--269955	5	15.8	5	73	15	61	76	4	2	17	1.06
269932--270103	74	2.3	73	80	11	172	64	2	8	25	1.33
270668--270837	34	4.8	35	86	7	202	31	13	12	42	1.82
271040--271079	21	1.9	21	89	0	62	55	2	5	37	1.35
279454--279493	14	2.7	16	77	18	50	37	0	0	62	0.95
280185--280255	30	2.4	30	100	0	142	30	36	2	29	1.72
282551--282600	26	1.9	26	84	8	66	52	10	6	32	1.59
287175--287212	19	2.0	19	100	0	76	57	10	15	15	1.64
304843--305617	209	3.6	218	83	7	833	32	20	12	35	1.90
305478--305758	141	2.0	141	85	2	386	26	23	13	36	1.92
308680--308715	13	2.8	13	100	0	72	38	47	8	5	1.57
310452--310507	3	18.7	3	100	0	112	67	0	32	0	0.91
313934--314732	226	3.6	222	84	7	907	32	20	11	35	1.89
314608--314876	141	1.9	139	84	3	328	26	24	11	36	1.90
314891--314929	13	3.0	13	100	0	78	46	7	0	46	1.31
315925--316205	141	2.0	141	87	1	411	27	24	13	34	1.93
317827--317878	3	17.7	3	84	4	70	32	3	1	61	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323803--323840	11	3.4	11	89	7	58	71	10	13	5	1.30
325012--325047	18	2.0	18	88	0	54	50	22	0	27	1.50
325013--325058	22	2.1	21	92	4	74	50	21	2	26	1.60
325515--325753	105	2.3	102	83	6	286	31	18	12	37	1.88
325699--325783	36	2.4	36	84	4	109	30	21	11	36	1.89
326068--326226	29	5.6	28	87	5	198	29	10	15	44	1.81
326068--326226	57	2.8	56	86	4	205	29	10	15	44	1.81
326332--326462	30	4.1	30	72	14	102	32	10	13	42	1.79
326379--326505	37	3.6	37	70	17	126	31	11	11	44	1.77
326349--326516	67	2.5	67	94	0	284	29	11	12	45	1.78
326349--326577	67	3.5	65	86	5	241	29	11	13	45	1.79
327354--327467	36	3.4	35	71	21	109	22	20	14	42	1.89
327483--327564	28	2.9	28	83	3	94	24	12	13	50	1.76
327622--327809	43	4.3	44	72	11	138	25	32	18	23	1.97
327583--327743	83	1.9	83	85	7	223	24	31	19	24	1.98
327607--327927	130	2.4	133	87	5	445	24	31	18	24	1.98
328123--328171	3	16.7	3	82	4	64	32	4	2	61	1.26
330615--330672	28	2.1	27	84	6	73	32	5	1	60	1.29
335463--335504	7	5.7	7	86	8	57	83	0	16	0	0.65
335464--335496	14	2.4	14	100	0	66	81	0	18	0	0.68
338163--338219	24	2.4	24	96	0	105	31	15	21	31	1.94
340336--340399	22	2.9	22	97	0	119	32	18	12	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341102--341164	20	3.3	20	63	13	51	42	9	23	23	1.83
341966--342016	26	1.9	27	88	4	77	17	9	3	68	1.33
342565--342838	136	2.0	138	95	3	500	26	13	12	47	1.78
345847--345881	3	11.7	3	100	0	70	68	0	31	0	0.90
349313--350107	225	3.6	220	85	7	947	32	20	12	35	1.89
349982--350248	141	1.9	141	88	0	408	25	25	13	35	1.93
350266--350291	13	2.0	13	100	0	52	46	7	0	46	1.31
351272--351548	138	2.0	140	84	5	366	27	23	13	35	1.92
354171--354240	26	2.8	25	72	18	65	75	4	2	17	1.08
354253--354304	2	27.5	2	86	11	74	55	0	0	44	0.99
354834--355004	6	33.2	5	70	21	72	59	1	2	35	1.23
354945--355005	2	32.0	2	87	9	92	47	1	0	50	1.10
357146--357252	56	1.9	57	81	12	132	71	2	10	14	1.23
357402--357465	2	32.5	2	96	3	121	50	0	0	50	1.00
357840--357885	11	4.2	11	86	8	58	67	4	6	21	1.32
357836--358000	9	16.3	10	67	21	53	67	1	6	24	1.25
358551--358647	37	2.6	37	85	0	131	31	12	15	40	1.84
359378--360356	106	9.3	106	88	4	1342	23	18	24	34	1.96
359378--360362	422	2.3	417	89	3	1442	23	18	24	34	1.96
361100--361176	22	3.5	22	90	0	127	20	15	27	36	1.93
365750--365858	56	1.9	57	81	12	134	71	2	10	15	1.24
365750--365884	28	4.7	27	70	22	73	72	3	8	15	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365878--365945	32	2.3	29	82	12	77	63	2	4	29	1.29
366001--366031	2	15.5	2	100	0	62	51	0	0	48	1.00
366452--366508	25	2.2	26	82	11	73	71	1	0	26	0.95
366522--366566	12	3.7	12	81	3	54	66	0	4	28	1.11
366453--366507	15	3.7	15	75	18	53	70	1	0	27	0.97
367127--367223	37	2.6	37	85	0	140	34	11	14	40	1.82
367953--368934	106	9.3	106	89	3	1383	23	18	24	34	1.96
369672--369748	22	3.5	22	90	0	127	20	15	27	36	1.93
370366--370399	15	2.2	16	89	5	52	0	11	5	82	0.83
375060--375087	6	4.7	6	100	0	56	85	0	14	0	0.59
375132--375160	2	14.5	2	100	0	58	51	0	0	48	1.00
375429--375467	2	19.5	2	100	0	78	51	0	0	48	1.00
375682--375722	11	3.6	11	87	6	55	65	4	4	24	1.32
375937--375998	2	31.0	2	100	0	124	50	0	0	50	1.00
393974--394005	3	10.7	3	93	0	55	0	34	3	62	1.11
399485--399521	15	2.5	15	100	0	74	56	10	27	5	1.55
402807--402857	3	16.3	3	84	11	59	64	0	1	33	1.05
406947--407000	23	2.3	23	90	0	81	11	11	18	59	1.60
406947--407037	10	9.1	10	71	17	73	9	12	19	58	1.62
407107--407141	14	2.3	15	90	9	54	14	5	14	65	1.44
407357--407407	13	3.8	13	77	12	50	72	5	1	19	1.15
408948--408997	14	3.6	14	91	0	82	42	36	4	18	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408948--408998	7	7.3	7	77	0	57	43	35	3	17	1.68
410253--410313	31	2.0	31	86	0	86	42	13	11	32	1.79
416293--416394	34	2.9	36	89	5	163	44	13	13	28	1.82
416290--416428	37	3.8	37	83	5	158	41	13	12	31	1.83
416585--416682	20	4.8	20	77	3	88	36	23	18	21	1.95
416526--416682	41	3.9	41	70	11	126	38	25	17	18	1.93
416669--416842	20	8.6	20	79	5	118	34	25	20	20	1.96
416649--416843	40	4.9	39	80	3	183	35	24	20	19	1.95
416649--416842	60	3.2	60	83	0	244	35	24	20	19	1.95
417225--417295	33	2.2	33	92	0	115	11	22	16	49	1.78

Tables:   1   2   3   4