genome.fa.s9636.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009636.1 Hibiscus syriacus cultivar Beakdansim tig00117040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  700957

Tables:   1   2   3   4   

This is table  4  of  4  ( 443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537344--537431	27	3.4	28	81	9	98	13	14	17	54	1.71
537463--537488	10	2.6	10	100	0	52	50	19	19	11	1.77
537475--537553	31	2.5	31	95	0	140	45	26	13	13	1.82
543323--543347	2	12.5	2	100	0	50	48	0	0	52	1.00
546231--546310	20	3.7	20	72	18	79	18	27	10	43	1.82
546219--546327	46	2.4	46	95	1	193	20	22	10	46	1.80
546747--546838	41	2.2	41	84	7	116	29	22	13	34	1.92
551312--551574	26	10.0	26	69	20	156	20	22	10	46	1.82
551338--551561	46	4.9	46	88	2	342	21	23	9	45	1.81
551280--551574	72	4.2	71	74	17	299	21	22	10	46	1.81
551457--551534	20	3.6	20	70	18	66	21	24	10	43	1.83
556706--556786	41	2.0	41	92	0	135	20	20	2	55	1.55
557389--557420	6	5.5	6	92	7	57	84	15	0	0	0.63
557384--557420	11	3.4	11	89	10	58	83	16	0	0	0.64
557800--557858	25	2.4	25	83	11	68	54	3	8	33	1.48
558225--558259	6	5.8	6	100	0	70	17	0	14	68	1.21
559367--559414	19	2.6	17	90	9	69	31	16	27	25	1.97
559320--559445	65	2.0	63	83	9	157	33	15	23	27	1.95
561611--561636	2	13.0	2	100	0	52	50	0	0	50	1.00
562056--562136	24	3.6	23	75	14	87	28	20	25	24	1.99
562056--562156	44	2.3	43	83	6	114	27	19	25	26	1.99
564839--564867	14	2.1	14	100	0	58	41	13	17	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568021--568068	19	2.6	17	90	9	69	31	16	27	25	1.97
567974--568119	65	2.3	63	82	10	170	32	16	23	28	1.96
571903--571971	16	4.2	16	81	10	68	78	0	15	5	0.94
573761--573815	22	2.6	20	78	13	56	9	1	9	80	0.99
576537--576615	35	2.3	35	86	0	113	43	22	1	32	1.62
577147--577440	145	2.0	147	91	3	477	46	10	7	36	1.65
577606--577690	35	2.4	35	88	5	118	34	2	22	41	1.67
587059--587105	23	2.0	23	87	0	67	34	14	6	44	1.71
591860--591889	15	2.0	15	93	0	51	43	0	0	56	0.99
603010--603034	2	12.5	2	100	0	50	48	0	0	52	1.00
610112--610147	2	18.0	2	100	0	72	50	0	0	50	1.00
610861--610973	35	3.2	36	86	3	140	35	2	19	42	1.65
627446--627506	21	3.2	21	65	29	64	31	4	21	42	1.74
627438--627556	35	3.3	37	88	8	174	32	5	20	42	1.74
628434--628461	13	2.2	13	100	0	56	14	14	7	64	1.48
632714--632771	2	30.0	2	89	6	93	46	0	1	51	1.11
632714--632780	24	2.8	24	88	8	93	43	2	1	52	1.25
632803--632858	18	3.1	18	76	0	58	25	8	0	66	1.21
633329--633392	5	12.8	5	76	18	62	15	1	4	78	1.00
633321--633392	18	4.2	18	70	22	66	15	1	5	77	1.01
633316--633392	26	3.0	26	80	14	90	15	1	6	76	1.05
637065--637142	39	2.0	39	82	5	95	29	26	25	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644703--645624	105	8.9	105	94	3	1544	34	25	17	21	1.96
647358--647392	2	18.0	2	88	5	54	45	0	2	51	1.16
647427--647495	9	7.7	9	72	4	50	23	8	0	68	1.17
647427--647482	18	3.1	18	76	0	58	25	8	0	66	1.21
647545--647616	21	3.7	20	72	18	62	29	1	2	66	1.14
647634--647661	2	14.0	2	100	0	56	50	0	0	50	1.00
647968--648033	5	12.8	5	74	17	55	15	3	4	77	1.06
647955--648010	26	2.2	26	90	6	87	17	1	5	75	1.09
662269--662316	23	2.1	23	88	0	69	35	12	18	33	1.89
662696--662767	23	3.2	22	88	4	90	38	19	5	36	1.75
663117--663170	23	2.5	20	75	18	54	42	18	1	37	1.61
663132--663189	23	2.5	23	91	0	89	37	18	6	36	1.78
665683--666722	183	5.6	184	97	1	1903	34	15	15	35	1.89
668087--668137	3	17.0	3	83	0	66	25	33	3	37	1.74
668087--668149	12	5.2	12	90	0	81	23	33	6	36	1.80
668091--668152	18	3.4	18	88	0	88	20	33	6	38	1.79
668091--668152	6	10.3	6	83	0	61	20	33	6	38	1.79
669615--671033	198	7.1	200	96	1	2561	32	15	15	37	1.88
669615--671033	398	3.6	399	96	1	2593	32	15	15	37	1.88
671099--671178	38	2.1	38	83	2	99	55	10	2	32	1.47
671115--671178	19	3.4	19	95	0	110	56	9	3	31	1.47
672974--673039	33	2.0	33	87	0	96	24	45	1	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675138--675190	24	2.2	24	83	6	63	26	7	13	52	1.66
675334--675380	20	2.4	19	79	10	58	19	17	8	55	1.67
675501--675547	20	2.3	20	89	10	78	17	17	10	55	1.69
677024--677097	34	2.2	35	80	7	89	12	13	25	48	1.77
677058--677104	24	2.0	24	91	0	76	10	8	23	57	1.60
677040--677105	34	1.9	34	93	0	114	12	10	21	56	1.65
677059--677118	24	2.5	24	83	5	68	13	8	18	60	1.58
678199--678271	16	4.7	16	88	3	96	10	10	19	58	1.61
678333--678365	16	2.1	16	100	0	66	6	12	24	57	1.57
680866--680921	15	3.7	16	75	20	57	51	5	3	39	1.42
680859--680921	30	2.1	30	93	0	108	50	4	7	36	1.53
684243--684303	31	2.0	31	86	0	86	24	9	9	55	1.63
695530--695597	20	3.3	21	83	6	95	38	16	22	23	1.93
696138--696186	20	2.5	20	83	3	73	44	20	20	14	1.86
696255--696312	20	2.9	20	82	10	73	13	22	18	44	1.85
698038--698246	94	2.2	93	92	5	350	19	12	20	47	1.81
698344--698430	18	4.9	18	74	16	74	12	20	20	45	1.83

Tables:   1   2   3   4

The End!