genome.fa.s989.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000989.1 Hibiscus syriacus cultivar Beakdansim tig00001980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  949177

Tables:   1   2   3   

This is table  3  of  3  ( 308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648116--648230	35	3.3	33	90	6	124	31	37	2	28	1.71
650967--651016	6	8.2	6	84	10	66	80	0	18	2	0.82
650967--651016	17	2.7	18	84	9	66	80	0	18	2	0.82
650975--651013	11	3.4	11	85	7	51	82	0	15	2	0.79
650967--651016	13	4.1	12	82	12	66	80	0	18	2	0.82
656257--656317	13	5.0	12	75	20	56	27	3	37	31	1.73
656239--656343	36	2.9	36	92	1	176	28	3	36	31	1.75
657595--657636	21	2.0	21	95	0	75	35	14	21	28	1.92
662604--662664	13	5.0	12	75	20	56	27	3	37	31	1.73
662586--662690	36	2.9	36	92	1	176	28	3	36	31	1.75
663313--663354	21	2.0	21	95	0	75	35	14	21	28	1.92
665067--665106	20	1.9	22	85	10	57	40	12	30	17	1.86
668793--668832	20	1.9	22	85	10	57	40	12	30	17	1.86
672072--672127	17	3.5	15	80	9	58	75	3	16	5	1.13
672082--672143	26	2.4	25	82	15	74	70	4	14	9	1.29
683677--683722	19	2.4	18	86	10	65	39	26	21	13	1.90
685612--685652	22	1.9	21	90	5	64	34	36	2	26	1.70
685967--686028	10	6.2	9	76	20	61	79	4	12	3	1.02
685985--686011	11	2.5	11	100	0	54	77	7	7	7	1.12
686122--686190	29	2.4	29	100	0	138	21	7	28	42	1.80
691149--691189	22	1.9	21	90	5	64	34	36	2	26	1.70
691973--692030	24	2.4	25	91	5	100	58	18	15	6	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712093--712769	338	2.0	338	85	4	918	26	25	11	36	1.90
723868--723947	35	2.2	37	91	4	128	27	3	37	31	1.74
730248--730335	11	7.6	11	75	20	56	27	5	36	30	1.80
730244--730335	24	4.0	22	74	20	73	26	5	36	31	1.79
730262--730360	13	8.2	12	73	21	66	28	4	37	30	1.75
730244--730358	35	3.2	35	95	2	194	26	4	37	31	1.76
750573--750602	13	2.4	13	94	5	53	26	30	0	43	1.55
762693--762732	14	2.8	14	92	3	62	77	12	10	0	0.99
762692--762731	15	2.7	15	84	11	55	80	10	10	0	0.92
770665--770707	10	4.5	10	82	11	54	0	4	9	86	0.71
773049--773073	13	1.9	13	100	0	50	24	36	0	40	1.55
773576--773607	16	1.9	17	93	6	57	31	25	0	43	1.55
780316--780366	19	2.6	20	87	3	68	45	5	15	33	1.71
784327--784377	19	2.6	20	87	3	68	45	5	15	33	1.71
797838--797891	24	2.3	24	84	9	67	61	14	12	11	1.58
800415--800461	20	2.3	20	96	0	85	42	8	23	25	1.82
805381--805410	13	2.4	13	94	5	53	43	0	30	26	1.55
810888--810939	2	26.0	2	96	0	95	48	1	0	50	1.12
810992--811031	19	2.3	17	87	12	55	42	12	2	42	1.56
814547--814624	2	39.0	2	100	0	156	50	0	0	50	1.00
814786--814907	47	2.6	47	100	0	244	41	20	15	22	1.89
817755--817794	20	1.9	20	85	10	53	32	7	32	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819125--819154	13	2.4	13	94	5	53	26	30	0	43	1.55
823052--823091	20	1.9	20	85	10	53	32	7	32	27	1.85
836081--836106	9	2.9	9	100	0	52	11	23	23	42	1.86
841586--841644	23	2.6	22	78	5	64	62	10	16	10	1.53
845507--846156	338	1.9	338	87	3	959	26	25	11	37	1.89
851499--851578	35	2.2	37	91	4	128	27	3	37	31	1.74
855983--856062	35	2.2	37	91	4	128	27	3	37	31	1.74
873172--873233	30	2.1	29	82	5	72	6	8	11	74	1.22
875574--875598	13	1.9	13	100	0	50	24	36	0	40	1.55
878640--878690	19	2.6	20	87	3	68	45	5	15	33	1.71
880067--880120	24	2.3	24	84	9	67	61	14	12	11	1.58
887718--887747	16	1.9	15	93	6	51	0	10	0	90	0.47
887721--887745	10	2.5	10	100	0	50	0	8	0	92	0.40
892410--892461	26	2.0	26	100	0	104	19	15	42	23	1.89
894781--894820	19	2.3	17	87	12	55	42	12	2	42	1.56
898488--898609	47	2.6	47	100	0	244	41	20	15	22	1.89
908682--908711	13	2.4	13	94	5	53	43	0	30	26	1.55
922162--922241	11	6.7	11	73	24	65	27	1	37	33	1.65
922162--922241	24	3.4	22	76	22	65	27	1	37	33	1.65
922162--922241	35	2.2	37	91	4	128	27	1	37	33	1.65
922182--922243	13	4.9	13	74	18	51	29	1	37	32	1.67
922579--922629	20	2.6	19	84	3	66	43	3	15	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930159--930191	16	2.1	16	94	0	57	33	21	6	39	1.78
944337--944372	15	2.4	15	90	0	54	19	25	0	55	1.43

Tables:   1   2   3

The End!