genome.fa.s990.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000990.1 Hibiscus syriacus cultivar Beakdansim tig00001982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  274437

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220104--220201	48	2.0	48	86	0	133	25	37	7	29	1.83
221449--221478	11	2.6	12	94	5	53	46	0	0	53	1.00
221455--221497	18	2.4	17	82	17	52	41	0	2	55	1.12
225767--225801	18	1.9	18	88	0	52	62	20	5	11	1.48
229544--229612	21	3.5	19	79	15	77	10	10	30	49	1.70
229545--229588	18	2.4	18	96	0	79	11	9	31	47	1.71
229543--229609	18	3.6	18	76	11	71	10	10	31	47	1.71
231373--231506	68	2.0	68	95	0	241	19	32	8	40	1.81
233350--233507	21	7.8	20	72	7	86	38	25	17	18	1.92
233474--233666	20	9.6	20	81	3	210	35	24	20	19	1.96
234048--234118	33	2.2	33	89	0	106	11	23	16	47	1.79
234191--234307	41	3.1	38	79	14	136	45	17	25	11	1.82
234198--234273	21	3.7	21	85	3	109	44	18	25	11	1.83
234258--234314	14	3.7	14	75	20	60	43	22	24	8	1.81
234250--234330	33	2.5	33	93	0	135	45	23	22	8	1.79
234326--234423	19	5.7	19	68	22	72	10	24	23	41	1.85
234348--234437	14	5.7	14	74	23	81	8	25	24	41	1.84
234331--234445	33	3.5	33	95	0	203	9	24	21	44	1.82
236143--236616	93	5.1	93	99	0	930	22	12	18	45	1.83
236660--236788	19	7.3	19	73	21	102	46	24	17	10	1.80
236716--236772	14	3.7	14	77	20	60	45	22	21	10	1.82
236697--236788	33	2.8	33	91	0	148	46	23	19	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236784--236918	19	7.6	19	75	16	128	11	19	23	45	1.82
236806--236862	14	3.7	14	77	20	60	10	21	22	45	1.82
236789--236881	33	2.8	33	95	0	168	10	20	21	47	1.80
238847--238882	14	2.6	14	95	0	63	33	0	22	44	1.53
238989--239138	19	8.4	19	77	18	153	45	17	23	14	1.84
239007--239157	33	4.4	33	76	15	171	44	17	24	13	1.85
238989--239157	52	3.2	52	92	5	279	44	17	24	13	1.85
238989--239138	71	2.1	72	88	6	225	45	17	23	14	1.84
241474--241498	12	2.1	12	100	0	50	0	28	0	72	0.86
241673--241719	24	2.0	24	87	8	69	38	21	14	25	1.92
242399--242648	20	12.5	20	84	3	261	19	18	24	37	1.94
242635--242717	21	4.0	21	73	6	78	25	16	24	33	1.96
242615--242713	42	2.4	43	77	11	100	21	18	23	37	1.94
242908--242957	9	5.4	9	79	13	57	72	0	2	26	0.96
244177--244226	7	7.0	7	78	13	57	66	0	2	32	1.03
244156--244374	25	9.1	24	70	20	95	60	1	1	36	1.16
244194--244383	43	4.5	44	70	24	131	58	2	1	37	1.22
244194--244418	81	2.8	79	76	16	212	57	3	1	37	1.24
244158--244419	34	7.7	33	76	16	177	58	3	1	36	1.23
244159--244419	63	4.2	63	68	21	99	58	3	1	36	1.23
244156--244419	102	2.6	96	78	16	275	58	3	1	36	1.23
244196--244371	2	97.5	2	66	28	67	58	2	1	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244715--244790	35	2.2	35	87	0	107	40	22	1	35	1.62
245189--245436	130	1.9	130	93	0	424	35	15	12	35	1.86
245203--245467	130	2.0	129	81	4	309	39	13	13	33	1.84
245766--245828	28	2.3	27	78	8	63	46	1	3	49	1.27
245908--245942	17	1.9	19	88	11	56	65	5	2	25	1.28
245951--246017	16	4.2	16	70	0	53	41	2	1	53	1.25
246078--246125	17	2.9	17	79	14	55	62	4	2	31	1.26
247376--247402	14	1.9	14	100	0	54	59	11	14	14	1.62
247445--247510	24	2.8	24	88	0	96	56	18	16	9	1.66
247944--247991	17	2.9	17	79	14	55	31	2	4	62	1.26
248052--248085	16	2.1	16	88	0	50	50	0	2	47	1.16
248128--248161	16	2.0	18	88	11	54	26	2	5	64	1.30
248353--248417	25	2.6	25	97	0	121	47	3	3	46	1.33
248656--248903	130	1.9	130	91	0	406	35	12	15	35	1.86
249300--249375	35	2.2	35	92	0	125	35	1	23	39	1.63
252651--252681	16	1.9	16	100	0	62	38	0	32	29	1.57
253274--253348	32	2.5	28	80	15	96	45	30	9	14	1.77
254305--254379	27	2.7	28	91	4	116	46	4	14	34	1.63
254921--254991	35	2.0	35	100	0	142	28	14	19	38	1.91
257711--257786	9	8.4	9	86	0	107	26	15	0	57	1.38
262248--262301	25	2.2	25	83	9	67	50	24	18	7	1.72
262416--262459	16	2.6	17	80	19	56	38	0	13	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262421--262457	18	2.1	18	90	10	58	37	0	10	51	1.37
262988--263061	36	2.1	36	81	0	85	40	8	4	47	1.52
264399--264455	23	2.5	23	79	0	60	26	19	15	38	1.92
264575--265247	354	1.9	354	100	0	1346	33	21	16	29	1.95
266674--266824	27	5.6	27	98	0	275	35	18	9	37	1.83
271359--271418	29	2.1	29	87	0	84	36	6	21	35	1.80
271405--271474	34	2.1	34	97	0	131	32	8	22	35	1.85
271740--271840	49	2.1	49	96	0	184	41	16	5	35	1.73
271834--271882	18	2.9	17	81	6	55	51	4	0	44	1.20
273223--273265	20	2.1	21	86	4	61	4	11	2	81	0.93

Tables:   1   2

The End!