genome.fa.s996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000996.1 Hibiscus syriacus cultivar Beakdansim tig00001994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64172

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766--796	15	2.1	15	100	0	62	45	22	12	19	1.84
1427--1478	20	2.6	20	96	0	95	25	28	21	25	1.99
1466--1526	21	2.9	21	95	0	104	45	24	14	14	1.83
1947--2037	19	4.4	20	76	17	105	31	28	4	35	1.77
1958--2039	44	1.9	41	87	7	119	34	29	4	31	1.79
2718--2764	20	2.3	20	96	0	85	34	23	8	34	1.85
2718--2771	20	2.7	20	88	5	83	35	25	7	31	1.84
2740--2998	20	12.9	19	79	11	189	35	22	13	27	1.92
2819--2996	40	4.4	40	88	0	248	38	21	15	25	1.92
2740--3000	60	4.3	60	80	5	269	35	22	13	27	1.92
2995--3052	20	2.9	20	89	0	89	24	10	15	50	1.75
4021--4078	24	2.4	24	91	0	80	24	15	20	39	1.91
4319--4346	3	9.3	3	100	0	56	64	0	35	0	0.94
8929--8986	20	2.6	22	86	10	75	29	20	24	25	1.99
9697--9740	13	3.4	13	81	9	54	45	4	25	25	1.72
12692--12831	63	2.2	64	82	6	160	31	20	21	26	1.98
12819--12876	20	2.6	22	86	10	75	29	20	24	25	1.99
14222--14273	21	2.5	21	93	6	88	23	13	42	21	1.88
14682--14834	63	2.4	63	87	2	209	35	32	9	23	1.86
14682--14857	21	8.4	21	79	4	151	35	31	9	23	1.86
14957--15080	42	3.0	42	89	3	173	22	10	38	28	1.87
16518--16553	12	2.8	13	87	12	56	52	11	0	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16766--16833	25	2.7	25	97	0	127	39	25	11	23	1.88
17101--17171	29	2.4	29	100	0	142	35	12	25	26	1.92
17649--17698	20	2.5	20	80	6	57	32	12	26	30	1.92
33006--33045	19	2.2	18	86	4	53	62	0	2	35	1.09
45887--45933	25	2.0	25	87	8	71	44	0	0	55	0.99
46364--46515	36	4.4	33	72	21	109	46	0	7	45	1.35
46377--46557	38	5.0	37	75	15	132	45	1	7	46	1.38
46463--46559	38	2.4	39	86	8	133	46	1	7	45	1.37
46539--46573	2	17.5	2	100	0	70	51	0	0	48	1.00
46461--46655	92	2.2	89	83	13	235	43	0	6	49	1.32
46640--46699	17	3.4	18	84	9	79	25	0	1	73	0.93
46943--46985	21	2.1	21	82	4	52	34	27	25	11	1.91
47813--47927	51	2.2	53	82	11	141	18	6	4	70	1.27
47908--47978	17	4.2	16	73	15	63	15	2	2	78	0.98
47918--47970	28	2.0	26	81	7	61	16	3	3	75	1.10
47908--47987	25	3.2	24	75	25	76	16	3	2	77	1.02
53666--53744	23	3.7	21	76	14	81	21	18	35	24	1.96
53966--54005	21	1.9	21	89	0	62	50	10	10	30	1.69
55121--55158	19	2.0	20	94	5	69	34	13	5	47	1.65
57142--57241	21	4.7	21	78	10	105	20	18	38	24	1.93
59511--59679	85	2.0	86	82	5	209	33	18	18	28	1.95
62095--62197	50	2.1	50	82	10	124	17	5	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62084--62227	41	3.3	43	78	14	152	20	6	1	70	1.18
62307--62336	13	2.3	13	100	0	60	33	0	0	66	0.92
63633--63681	19	2.7	18	87	3	62	32	2	14	51	1.54
63631--63682	9	5.8	9	76	14	54	32	1	13	51	1.52

Tables:   1

The End!