genome.fa.s10105.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010105.1 Kokia drynarioides strain JFW-HI SEQ_124891, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  523673

Tables:   1   2   

This is table  2  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332870--332904	15	2.4	15	90	4	54	71	0	8	20	1.11
333103--333312	29	7.2	28	78	8	174	37	2	25	34	1.69
333103--333312	58	3.6	57	81	8	194	37	2	25	34	1.69
333103--333385	87	3.2	86	81	6	250	38	2	23	35	1.67
333145--333351	29	7.1	28	78	9	150	37	0	24	37	1.62
333186--333395	29	7.1	30	78	8	175	38	0	24	35	1.62
333159--333395	58	4.0	59	82	7	216	39	0	24	35	1.61
334428--334469	12	3.4	13	84	15	54	33	0	0	66	0.92
335060--335144	6	14.3	6	72	18	54	52	2	1	43	1.21
335080--335174	12	8.1	12	70	13	72	55	4	0	40	1.19
335060--335172	36	3.2	34	81	10	122	54	3	0	40	1.23
335060--335172	17	6.5	17	79	6	118	54	3	0	40	1.23
335609--336079	39	12.1	39	70	11	268	23	17	31	27	1.97
335823--336134	117	2.7	117	87	2	412	24	19	31	24	1.98
335707--336134	78	5.5	77	73	13	281	24	18	30	25	1.98
336014--336158	78	1.9	78	85	0	200	26	19	28	25	1.99
346899--346933	17	2.1	17	94	0	61	48	17	20	14	1.81
347680--347860	97	1.9	97	92	0	308	37	14	18	29	1.90
348001--348039	14	2.7	15	84	7	55	69	5	5	20	1.28
348239--348542	29	10.5	30	78	9	224	33	3	27	35	1.73
348236--348546	86	3.6	85	81	8	287	33	3	27	35	1.73
348239--348564	58	5.6	58	80	8	335	34	3	27	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348299--348607	30	10.7	29	76	10	217	36	2	25	35	1.69
350288--350412	17	7.2	17	82	3	151	55	4	0	40	1.24
350303--350412	6	19.0	6	70	14	70	55	4	0	40	1.20
350288--350412	35	3.6	35	86	1	171	55	4	0	40	1.24
356757--356866	12	8.7	13	66	18	54	67	2	4	25	1.23
356756--356888	38	3.5	38	88	4	196	66	3	4	24	1.27
360964--361012	3	16.3	3	91	0	80	28	4	0	67	1.09
361104--361277	72	2.4	73	79	7	165	35	10	8	46	1.67
372747--372874	50	2.6	50	88	2	186	33	20	26	19	1.96
372951--373157	40	5.3	40	73	13	153	31	22	20	25	1.98
372945--373161	78	2.8	78	81	9	255	31	23	20	24	1.98
373915--373945	3	10.3	3	92	0	53	3	32	32	32	1.74
375030--375069	3	13.3	3	100	0	80	32	0	0	67	0.91
375098--375247	72	2.1	70	81	4	167	33	9	8	48	1.66
376391--376490	36	2.8	36	89	0	146	27	25	13	35	1.92
388666--388703	20	1.9	20	84	10	51	60	10	7	21	1.54
402212--402249	20	1.9	20	84	10	51	60	10	7	21	1.54
413402--413450	21	2.3	21	85	0	62	34	28	10	26	1.89
414203--414641	193	2.3	192	81	5	494	25	25	21	27	1.99
418786--419231	195	2.3	194	80	5	472	27	26	18	27	1.98
419706--419737	16	2.0	16	93	0	55	25	18	3	53	1.59
427136--427295	27	5.9	27	75	5	126	26	31	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427136--427267	54	2.4	54	79	2	149	27	31	20	20	1.97
427310--427376	27	2.5	27	80	0	80	25	25	19	29	1.98
427389--427456	26	2.7	26	88	4	95	19	23	17	39	1.92
437674--437724	21	2.4	21	83	0	66	27	15	23	33	1.95
439591--439631	3	13.7	3	100	0	82	34	31	0	34	1.58
449045--449084	20	2.0	20	95	0	71	20	17	27	35	1.95
449830--449874	15	3.0	15	83	6	56	64	0	24	11	1.26
449839--449877	14	2.7	15	88	4	53	66	0	25	7	1.18
453528--453585	22	2.7	21	84	5	71	41	8	10	39	1.70
456265--456346	21	3.9	21	76	9	85	36	8	14	40	1.77
459223--459265	22	2.0	22	81	9	52	34	0	13	51	1.42
478436--478469	17	1.9	17	88	5	50	47	0	2	50	1.16
478472--478514	17	2.6	16	78	10	50	51	4	2	41	1.35
478539--478631	30	3.1	30	90	3	134	40	29	13	16	1.87
479228--479269	7	6.0	7	81	10	50	52	0	0	47	1.00
479229--479273	21	2.1	21	87	0	63	55	0	0	44	0.99
480280--480449	29	5.8	29	82	6	198	36	29	1	32	1.68
480280--480453	59	2.9	59	88	3	244	36	29	1	31	1.68
480290--480471	29	6.2	29	81	5	170	35	30	2	32	1.70
480280--480487	59	3.5	58	81	5	222	36	30	2	31	1.71
480464--480526	28	2.2	28	85	2	81	36	28	9	25	1.87
480481--480537	28	2.0	28	83	10	71	28	28	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482244--482290	12	3.7	12	81	15	51	63	2	34	0	1.06
486503--486533	16	1.9	16	93	0	53	32	9	19	38	1.84
488683--488739	24	2.4	24	81	0	78	59	10	8	21	1.57
490632--490691	24	2.5	24	86	0	75	46	5	18	30	1.70
492956--493043	43	2.0	43	93	4	151	31	7	19	40	1.80
492956--493043	21	4.1	22	83	5	126	31	7	19	40	1.80
493739--493773	18	1.9	18	88	0	52	48	8	8	34	1.64
494152--494193	22	1.9	23	85	9	61	30	23	7	38	1.82
503693--503739	24	2.0	24	83	4	60	72	6	8	12	1.27
514696--514855	36	4.4	36	93	0	257	40	12	25	21	1.89
517057--517110	21	2.6	21	82	5	65	31	27	9	31	1.88
519466--519609	78	1.8	78	90	0	234	23	29	12	34	1.92
521950--522027	38	2.1	38	100	0	156	30	20	12	35	1.90
522560--522618	29	2.0	29	83	6	75	44	3	6	45	1.47
523045--523084	12	3.2	12	86	6	53	80	0	20	0	0.72
523045--523086	21	2.0	21	85	0	57	78	0	21	0	0.75
523082--523111	16	1.9	15	93	6	51	50	0	50	0	1.00
523311--523344	12	2.6	14	86	13	54	29	0	5	64	1.17
523469--523508	21	2.0	20	90	5	62	25	0	12	62	1.30

Tables:   1   2

The End!