genome.fa.s10485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010485.1 Kokia drynarioides strain JFW-HI SEQ_125388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113830

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4306--4372	20	3.4	19	81	8	71	8	26	17	46	1.78
6503--6586	7	12.1	7	68	7	55	30	21	25	22	1.98
6503--6586	21	4.0	21	72	7	73	30	21	25	22	1.98
6639--6684	21	2.3	19	92	7	74	10	2	36	50	1.50
6841--7034	99	2.0	98	97	1	370	39	21	22	16	1.92
12492--12517	2	13.0	2	100	0	52	50	0	0	50	1.00
13694--13744	27	1.9	26	84	4	66	41	25	15	17	1.89
25284--25308	6	4.2	6	100	0	50	68	16	0	16	1.22
26734--27046	43	7.3	43	78	1	299	29	26	16	26	1.97
44981--45060	37	2.2	37	81	0	97	37	12	20	30	1.89
46165--46336	48	3.6	48	91	0	254	23	8	13	54	1.66
46222--46298	24	3.2	24	62	20	61	19	6	15	58	1.59
47739--47808	34	2.1	34	83	5	88	50	8	18	22	1.74
50084--50114	16	1.9	16	93	0	53	61	0	16	22	1.34
50907--50957	26	2.0	26	92	0	84	33	19	19	27	1.96
58217--58292	37	2.1	37	100	0	152	42	5	28	23	1.76
72303--72338	18	2.0	18	94	0	63	27	22	13	36	1.92
73707--73753	18	2.6	18	96	0	85	29	21	6	42	1.77
77333--77383	25	2.1	24	85	10	68	50	13	11	23	1.74
81934--81999	32	2.1	32	88	0	96	30	7	18	43	1.77
82976--84154	216	5.5	216	81	5	1372	39	13	16	29	1.88
83719--84114	202	2.0	202	83	3	510	40	13	16	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85399--85495	50	1.9	51	83	10	128	36	13	12	38	1.82
85696--85728	17	1.9	17	88	11	50	66	6	0	27	1.15
87517--88378	216	4.0	215	83	1	972	39	14	17	28	1.89
88759--90930	216	10.4	215	77	8	1981	40	14	16	28	1.87
89332--89373	21	2.0	21	81	9	50	54	9	9	26	1.63
87517--90930	631	5.4	627	76	10	2766	40	14	16	28	1.87
90079--90825	210	3.5	210	77	9	654	41	14	15	28	1.87
91397--91459	32	2.0	32	90	0	99	31	9	19	39	1.83
92450--97904	215	25.7	216	78	7	4916	40	13	16	28	1.87
92450--97869	631	8.5	628	77	9	4456	40	13	16	28	1.87
94996--97043	216	9.8	199	74	12	517	40	13	17	28	1.88
92450--97904	416	12.8	417	78	9	4060	40	13	16	28	1.87
102249--102303	24	2.3	24	93	0	92	69	1	21	7	1.23
102254--102298	18	2.5	18	77	0	54	71	2	17	8	1.23
107309--107357	24	2.0	24	96	0	89	73	4	16	6	1.19
107721--107755	18	2.0	17	94	5	61	14	17	5	62	1.49
109493--109638	74	2.0	70	88	7	213	32	13	15	39	1.86

Tables:   1

The End!