genome.fa.s10702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010702.1 Kokia drynarioides strain JFW-HI SEQ_125649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121196

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5090--5147	29	2.0	30	86	3	82	41	10	13	34	1.79
5100--5171	29	2.5	29	80	8	76	43	12	11	33	1.78
6821--6868	21	2.3	22	78	10	55	45	4	16	33	1.67
8165--8269	52	2.0	52	100	0	210	32	11	16	40	1.84
10240--10286	24	2.0	24	91	0	76	55	6	10	27	1.58
12649--12693	23	1.9	24	86	4	65	57	6	4	31	1.44
17628--17667	20	2.0	20	85	9	55	32	10	5	52	1.56
19151--19179	14	2.0	15	93	6	51	13	6	13	65	1.45
22491--22538	24	2.0	24	87	0	69	20	35	0	43	1.52
34281--34468	93	2.0	93	95	0	340	27	17	25	29	1.97
39737--39767	15	2.1	15	94	5	55	19	16	6	58	1.59
41398--41502	35	3.0	35	100	0	210	37	14	22	25	1.92
42119--42158	18	2.3	18	86	4	55	20	17	10	52	1.72
45203--45303	32	3.2	32	66	8	98	38	12	2	44	1.58
45182--45313	63	2.1	64	95	1	248	34	10	3	50	1.52
45217--45317	31	3.2	31	65	13	89	29	13	3	51	1.59
46652--47448	40	20.3	39	77	10	596	24	17	25	32	1.97
46609--47358	78	9.5	78	80	7	700	24	17	25	32	1.97
61531--61566	13	2.6	14	82	8	56	25	0	19	55	1.43
62995--63051	28	2.0	28	100	0	114	26	14	28	31	1.94
69117--69159	21	2.0	21	100	0	86	23	13	9	53	1.69
71097--71205	25	4.3	25	76	4	101	35	24	15	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72329--72368	17	2.4	17	91	0	62	27	37	20	15	1.92
74897--75107	81	2.6	81	82	4	248	26	15	24	33	1.95
76889--76999	55	2.0	55	98	0	213	46	16	20	16	1.83
81161--81302	30	4.8	30	82	2	164	29	3	25	41	1.72
81161--81302	59	2.4	60	83	4	164	29	3	25	41	1.72
81132--81311	89	2.0	89	82	4	220	30	4	23	41	1.74
82946--83384	124	3.6	122	78	7	464	21	20	17	40	1.92
83292--83431	48	2.9	48	88	0	199	24	23	14	37	1.92
83186--83547	172	2.1	172	90	1	555	23	21	15	38	1.92
83472--83632	85	1.9	85	88	0	241	22	22	15	38	1.92
83355--84479	209	5.4	209	87	1	1585	23	20	16	38	1.93
83682--83847	85	2.0	85	84	2	217	25	21	15	37	1.93
83890--84056	85	2.0	85	86	0	235	23	20	16	38	1.92
84099--84262	85	1.9	85	82	0	202	23	21	17	38	1.93
84308--84559	85	3.0	85	85	2	328	22	22	17	37	1.94
83357--84707	418	3.2	407	79	9	1288	23	20	16	38	1.92
83355--84707	627	2.2	623	82	5	1620	23	20	16	38	1.92
84099--84683	294	2.0	294	81	2	683	23	20	17	39	1.92
84480--84715	124	1.9	124	87	0	346	24	18	16	40	1.91
84782--84932	44	3.4	44	80	8	171	29	13	25	31	1.94
84770--85239	45	10.6	44	75	7	328	28	17	23	30	1.97
84783--85239	88	5.2	90	77	8	386	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85488--85704	49	4.4	49	76	6	199	21	22	17	38	1.93
85486--85705	98	2.2	97	80	6	255	20	23	17	38	1.93
86600--86648	7	6.7	7	81	9	62	0	16	0	83	0.64
86601--86641	5	8.2	5	84	15	50	0	17	0	82	0.66
92344--92487	30	4.8	30	81	9	134	27	6	27	39	1.80
94416--94636	80	2.8	80	82	6	243	24	20	25	28	1.99
95348--95497	4	36.5	4	73	7	86	28	1	4	66	1.20
95421--95488	29	2.3	29	87	0	91	22	1	5	70	1.17
97833--97870	15	2.5	15	87	12	51	52	5	5	36	1.47
102246--102292	22	2.1	23	88	4	69	44	2	6	46	1.40
102232--102292	22	2.6	22	82	10	68	45	3	6	44	1.46
114661--114725	4	16.2	4	96	0	121	49	24	1	24	1.59
115621--115654	3	11.3	3	93	0	59	61	0	2	35	1.11
115621--115683	9	7.0	9	90	0	54	52	0	14	33	1.42
120466--120522	21	2.7	21	88	0	78	12	15	35	36	1.85

Tables:   1

The End!