genome.fa.s10868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010868.1 Kokia drynarioides strain JFW-HI SEQ_125836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624094

Tables:   1   2   

This is table  1  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5949--5999	25	2.1	25	85	10	70	31	11	5	50	1.62
23103--23333	115	2.0	115	98	0	444	39	16	12	30	1.87
24075--24128	17	3.1	17	76	12	65	53	11	20	14	1.71
35415--35453	20	2.0	20	84	0	51	74	7	2	15	1.15
39176--39212	17	2.2	16	90	4	56	8	0	29	62	1.24
42914--42989	37	2.1	37	92	5	127	28	30	17	23	1.97
43943--43973	16	1.9	16	93	0	53	22	16	0	61	1.34
56905--56941	18	2.1	18	94	0	65	35	10	13	40	1.80
61686--61772	18	4.6	19	70	16	56	26	22	19	31	1.98
61686--61818	19	7.1	19	75	7	83	30	21	21	27	1.98
64321--64364	5	8.8	5	92	0	61	20	20	0	59	1.39
86452--86497	21	2.2	21	84	3	58	82	2	15	0	0.76
86461--86500	6	6.3	6	86	11	53	82	0	17	0	0.67
90944--91401	50	9.1	49	67	16	188	26	18	18	35	1.95
90949--91417	101	4.7	101	80	4	500	27	18	18	36	1.94
92256--92310	20	3.1	17	72	25	51	0	14	3	81	0.82
92264--92310	18	2.6	19	83	10	62	0	14	4	80	0.85
92255--92310	23	2.6	22	81	15	64	0	16	3	80	0.85
93545--93654	48	2.3	48	82	7	150	10	16	19	53	1.71
98357--98435	23	3.3	23	74	11	68	72	6	2	18	1.18
98359--98410	19	2.9	18	88	8	79	75	7	0	17	1.03
99580--99613	17	1.9	18	94	5	61	20	20	47	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100232--100552	100	3.2	99	79	4	322	27	19	17	35	1.94
100428--100603	51	3.5	50	75	11	153	27	19	16	36	1.93
100206--100590	100	3.8	98	76	8	260	26	20	16	36	1.94
100769--101002	96	2.4	97	84	5	292	27	18	19	34	1.95
101727--101802	39	2.0	38	87	7	109	2	17	0	80	0.83
101728--101804	10	7.7	10	75	13	61	2	15	0	81	0.79
117932--117962	7	4.4	7	91	0	53	12	3	41	41	1.59
148269--148322	20	2.7	20	80	16	58	44	0	12	42	1.43
150107--150156	21	2.4	21	82	0	64	24	14	26	36	1.93
170151--170188	17	2.2	18	81	13	53	15	7	15	60	1.57
180745--180852	53	2.0	53	98	0	207	32	12	16	38	1.86
187422--187464	23	1.9	23	85	4	61	20	27	25	25	1.99
196345--197606	626	2.0	629	94	1	2199	28	21	15	33	1.95
204570--204620	21	2.4	21	80	0	57	29	13	21	35	1.92
212514--212558	19	2.4	19	81	7	56	37	0	4	57	1.19
213262--213323	22	2.9	21	81	15	65	14	11	1	72	1.19
214854--214897	21	2.1	21	91	0	70	45	11	9	34	1.72
216819--217013	108	1.8	108	80	8	236	38	12	23	25	1.90
217376--217404	2	15.0	2	92	7	51	48	0	0	51	1.00
217614--217658	19	2.4	19	81	7	56	37	0	4	57	1.19
218459--218519	22	2.8	22	90	7	90	16	11	0	72	1.13
218464--218493	16	1.9	16	93	6	53	16	13	0	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219221--219569	187	1.9	187	91	0	572	32	18	14	34	1.91
221549--221592	17	2.6	17	96	3	81	29	27	18	25	1.98
221764--221845	29	2.8	29	86	3	101	47	15	3	32	1.63
221773--221878	29	3.6	29	83	5	122	46	14	4	34	1.65
221773--221878	31	3.5	31	84	12	125	46	14	4	34	1.65
230323--230389	34	1.9	34	87	6	98	71	13	4	10	1.27
230358--230480	22	5.8	22	76	16	116	65	22	6	4	1.35
230367--230480	39	2.8	39	81	6	120	64	22	7	5	1.38
230427--230480	11	4.9	11	73	8	56	62	27	7	1	1.32
236884--236937	28	1.9	28	84	0	72	20	16	14	48	1.81
237052--237119	21	3.3	20	75	15	59	69	1	1	27	1.06
237042--237097	21	2.4	23	78	18	62	73	0	1	25	0.93
252517--252585	17	4.0	17	82	1	75	21	23	8	46	1.79
256458--256516	30	2.0	30	86	3	84	33	6	16	42	1.75
258540--258577	19	2.0	19	90	10	51	78	0	15	5	0.91
259872--259924	9	6.0	9	76	10	56	32	3	1	62	1.24
259872--259926	26	2.2	25	87	9	76	32	3	1	61	1.24
260305--260349	2	22.5	2	100	0	90	51	0	0	48	1.00
266610--266683	34	2.2	34	85	4	96	66	14	8	10	1.44
282560--282618	21	2.8	21	76	0	55	35	22	16	25	1.95
282926--283044	33	3.8	31	92	6	197	43	10	5	41	1.60
282924--283044	64	1.9	62	94	3	215	43	9	4	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284519--284561	22	2.0	22	81	9	52	30	11	0	58	1.34
286856--287034	41	4.4	41	82	1	198	36	12	22	28	1.91
286856--287062	82	2.5	81	79	5	193	37	11	22	28	1.89
295801--295836	15	2.4	15	90	0	54	13	13	5	66	1.41
298776--298817	6	6.3	7	82	17	54	73	2	23	0	0.94
298776--298817	21	2.1	19	91	8	66	73	2	23	0	0.94
300332--300374	18	2.6	16	79	13	50	30	18	11	39	1.86
314563--314720	81	1.9	82	80	3	185	34	21	17	26	1.95
314567--314686	27	4.4	27	73	8	100	34	21	15	29	1.94
325580--325765	52	3.6	52	86	2	250	35	22	15	27	1.93
328194--328287	37	2.5	37	91	0	152	35	23	14	26	1.94
329138--329178	16	2.6	16	78	17	50	24	17	7	51	1.70
331647--332016	122	3.0	123	88	3	532	43	8	9	38	1.67
336709--337195	123	4.0	123	89	2	730	42	8	10	39	1.69
336729--337195	245	1.9	245	89	3	735	42	8	9	39	1.69
339730--339788	21	2.8	21	78	0	64	37	25	15	22	1.93
340415--340518	36	2.9	36	83	8	113	23	25	16	35	1.95
340645--340828	92	2.0	91	90	1	287	31	24	15	28	1.95
341694--341746	20	2.5	21	81	9	63	35	20	0	43	1.52
347039--347096	21	2.8	21	78	0	62	39	25	10	24	1.87
347803--347873	36	2.0	36	94	0	124	19	28	16	35	1.94
347804--347881	36	2.2	36	90	0	120	21	26	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352961--352986	8	3.2	8	100	0	52	23	0	0	76	0.78
354554--354752	60	3.3	60	79	4	195	48	11	14	26	1.77
355370--355396	14	1.9	14	100	0	54	22	22	11	44	1.84
355403--355490	9	10.1	9	73	11	67	65	0	0	34	0.93
355399--355518	9	13.1	10	68	19	66	65	0	0	33	1.05
355408--355525	18	6.7	18	73	17	79	66	0	0	32	1.04
355408--355525	17	6.7	17	72	18	82	66	0	0	32	1.04
355403--355490	27	3.4	25	77	17	83	65	0	0	34	0.93
355792--355886	18	5.3	18	71	16	65	32	2	4	61	1.27
357263--357292	6	5.0	6	100	0	60	0	66	0	33	0.92
358887--358940	27	2.0	27	85	7	74	25	16	12	44	1.84
360584--360650	26	2.6	26	90	0	98	62	4	11	20	1.46
362123--362156	7	4.9	7	89	10	52	17	0	0	82	0.67
362123--362153	13	2.3	14	94	5	55	16	0	0	83	0.64
373531--373576	19	2.4	19	77	0	56	34	15	17	32	1.91
382522--382588	24	2.8	24	93	0	107	28	23	19	28	1.98
386127--386156	14	2.2	14	94	5	53	36	10	23	30	1.87
386698--386760	31	2.0	31	100	0	126	22	36	6	34	1.80
398214--398245	16	2.0	16	93	0	55	59	0	15	25	1.36
399041--399095	26	2.1	26	90	6	85	30	25	18	25	1.98
402907--403081	59	3.0	59	89	1	235	36	2	21	40	1.66
402915--403081	30	5.7	29	85	3	217	35	1	22	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404085--404132	13	3.4	14	82	8	53	22	0	2	75	0.91
404790--404990	39	5.1	40	75	7	124	21	17	26	34	1.96
404829--404980	39	3.9	39	79	10	175	23	17	25	33	1.96
404771--404978	79	2.6	79	85	0	263	23	16	26	34	1.95
405032--405173	50	2.8	50	81	4	162	19	21	21	37	1.95
416740--416911	30	5.8	31	79	9	105	34	4	20	40	1.71
416768--416990	30	7.6	30	84	5	276	33	1	21	43	1.63
417945--417986	13	3.0	14	82	6	50	21	0	2	76	0.90
417999--418036	3	12.7	3	100	0	76	68	0	0	31	0.90
423524--423607	18	4.6	18	78	3	78	35	23	15	25	1.94

Tables:   1   2