genome.fa.s10868.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010868.1 Kokia drynarioides strain JFW-HI SEQ_125836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624094

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431676--431825	33	4.5	33	76	5	95	30	23	16	30	1.96
431777--431840	33	1.9	33	87	0	92	31	18	12	37	1.88
431833--431867	2	17.5	2	100	0	70	51	0	0	48	1.00
455482--455525	21	2.1	21	86	0	61	18	27	18	36	1.94
460738--460805	34	2.0	34	100	0	136	26	29	14	29	1.95
461692--461744	23	2.3	23	100	0	106	22	30	16	30	1.96
468651--468683	17	1.9	17	100	0	66	24	24	6	45	1.75
471533--471848	41	7.7	41	80	7	363	27	23	12	37	1.90
471541--471848	82	3.7	81	87	4	447	26	23	12	37	1.90
472002--472162	81	2.0	81	100	0	322	28	26	8	36	1.86
481154--481210	27	2.1	27	100	0	114	35	12	35	17	1.87
482405--482504	3	33.7	3	84	2	94	21	4	7	68	1.31
484231--484800	32	17.8	32	88	1	840	30	18	17	33	1.94
486329--486527	32	6.2	32	86	6	235	30	17	17	35	1.92
486479--486592	33	3.5	32	76	4	95	29	15	18	35	1.92
486329--486519	95	2.0	96	86	8	273	31	16	17	34	1.92
495429--495471	16	2.6	16	76	16	52	51	0	0	48	1.00
497486--497538	25	2.1	25	86	6	72	37	18	3	39	1.69
498598--498638	15	2.8	16	92	7	61	75	0	12	12	1.05
499836--499865	9	3.4	9	95	4	53	73	10	16	0	1.09
500292--500339	24	2.1	23	81	11	55	10	43	0	45	1.38
500297--500345	24	2.1	23	88	3	71	8	40	0	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509537--509606	35	2.0	34	83	2	86	47	8	21	22	1.78
509997--510041	18	2.3	18	85	11	54	0	33	0	66	0.92
522921--522946	2	13.0	2	100	0	52	50	0	0	50	1.00
524594--524636	18	2.4	18	92	0	68	60	11	23	4	1.50
529263--529301	6	6.2	6	82	11	51	79	2	15	2	0.95
529263--529301	13	3.1	12	85	10	51	79	2	15	2	0.95
529263--529301	19	2.1	19	85	9	53	79	2	15	2	0.95
530686--530710	12	2.1	12	100	0	50	36	8	16	40	1.77
531303--531364	31	2.0	31	100	0	124	29	9	16	45	1.79
538870--538900	15	2.1	15	93	0	53	45	6	9	38	1.63
548022--548075	26	2.1	26	86	6	74	29	16	24	29	1.97
548877--548907	16	1.9	16	93	0	53	22	16	0	61	1.34
550284--550324	19	2.2	19	95	0	73	51	17	9	21	1.74
553446--553485	18	2.2	18	90	0	62	12	32	10	45	1.75
555010--555057	21	2.3	21	78	7	53	68	2	0	29	1.01
556302--556348	23	2.0	23	95	0	85	51	10	8	29	1.66
561171--561195	13	1.9	13	100	0	50	48	8	0	44	1.32
566649--566685	7	5.3	7	96	0	65	81	0	0	18	0.70
573222--573268	24	2.0	23	87	4	67	46	0	2	51	1.13
574266--574309	23	2.0	22	86	4	61	52	2	0	45	1.13
577429--577464	16	2.2	18	80	19	51	33	0	5	61	1.19
577432--577464	17	2.1	17	88	11	52	33	0	6	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581197--581528	24	13.4	24	67	12	179	33	17	28	20	1.95
581197--581553	50	7.2	50	85	1	477	33	17	28	20	1.95
582643--582681	19	2.1	19	85	0	51	43	15	15	25	1.86
586111--586156	23	2.0	22	88	12	67	45	28	2	23	1.65
587781--587854	23	3.2	23	83	7	80	18	20	35	25	1.96
587900--587952	23	2.3	23	77	6	54	24	11	30	33	1.90
588343--588417	39	1.9	39	91	5	125	52	6	25	16	1.68
591668--591831	81	2.0	81	100	0	328	42	14	14	28	1.85
595462--595508	15	3.1	15	76	14	51	72	0	19	8	1.10
602687--602743	25	2.3	25	87	0	78	19	21	28	31	1.97
608637--608685	21	2.3	21	79	6	55	32	28	12	26	1.92
612046--612187	27	5.3	27	81	1	126	23	11	21	42	1.86
612046--612178	54	2.5	54	82	2	178	24	12	21	41	1.88
614766--614794	6	4.8	6	100	0	58	31	34	0	34	1.58
616127--616160	7	4.9	7	88	0	50	44	14	8	32	1.76

Tables:   1   2

The End!