genome.fa.s10987.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010987.1 Kokia drynarioides strain JFW-HI SEQ_125957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  330895

Tables:   1   2   

This is table  2  of  2  ( 162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239537--239571	18	1.9	18	100	0	70	28	28	5	37	1.80
239855--239915	26	2.3	26	83	5	79	29	16	21	32	1.95
247167--247221	17	3.2	17	84	0	74	21	20	9	49	1.76
247530--247606	38	2.0	38	100	0	154	40	15	0	44	1.47
249701--249836	62	2.2	59	89	5	200	32	8	10	49	1.66
250381--250468	21	4.1	22	77	10	92	42	20	2	35	1.65
253863--253895	14	2.4	14	94	0	57	69	12	0	18	1.18
254515--254715	93	2.2	92	82	6	244	36	16	5	40	1.73
254761--254951	69	2.8	66	83	5	238	37	14	6	41	1.73
255991--256085	41	2.4	37	82	14	127	37	4	1	56	1.26
256002--256087	41	2.1	42	93	2	147	34	4	1	59	1.26
256471--256527	29	1.9	30	89	3	89	29	3	14	52	1.58
256471--256538	30	2.3	29	85	7	84	29	4	13	52	1.59
256703--256784	29	2.8	29	83	9	87	50	8	1	40	1.41
259758--259834	38	2.0	39	97	2	147	9	12	20	57	1.63
259765--259828	19	3.3	19	69	18	60	6	14	20	59	1.56
268610--269099	29	16.8	29	71	11	188	36	4	24	33	1.77
268610--269093	58	8.3	55	74	11	317	37	4	24	33	1.77
268638--269064	88	4.9	88	81	7	451	37	4	23	33	1.76
270831--270940	6	18.8	6	69	15	52	57	4	0	37	1.26
270839--270942	17	6.1	17	85	3	129	58	3	0	36	1.23
270839--270942	34	3.0	33	90	6	154	58	3	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271413--271466	24	2.2	24	93	0	90	24	12	5	57	1.57
274916--275150	43	5.3	43	79	12	244	29	28	17	24	1.97
274937--275119	94	1.9	94	87	0	267	27	27	18	26	1.98
278027--278142	41	2.8	41	82	2	133	19	26	18	34	1.96
280523--280761	41	5.8	41	85	1	300	19	31	20	28	1.97
280537--280761	83	2.7	81	87	1	306	18	32	20	28	1.96
283874--283912	19	2.1	19	100	0	78	35	20	10	33	1.86
287650--287682	16	2.0	17	88	5	50	0	18	0	81	0.68
288281--288315	17	2.1	17	89	10	54	54	14	17	14	1.72
311529--311569	22	1.9	21	90	5	64	29	12	2	56	1.49
313819--313846	2	14.0	2	100	0	56	50	0	0	50	1.00
320161--320208	9	5.1	9	87	9	60	58	2	0	39	1.10
325454--325519	33	2.0	33	100	0	132	57	3	3	36	1.29
326239--326293	19	2.8	19	94	2	92	27	5	25	41	1.77
327304--327336	15	2.2	15	100	0	66	33	30	18	18	1.94
327953--328325	48	7.8	48	93	0	566	24	40	13	21	1.89
328430--328537	54	2.0	54	98	0	207	22	41	16	19	1.90
328696--328730	18	1.9	18	88	0	52	28	40	11	20	1.87
328484--328744	66	4.0	66	86	1	335	21	39	17	21	1.93
329136--329175	19	2.0	19	85	9	53	67	2	5	25	1.23

Tables:   1   2

The End!