genome.fa.s10996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010996.1 Kokia drynarioides strain JFW-HI SEQ_125966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69350

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--9417	216	44.3	212	75	9	6463	27	17	13	40	1.88
4--9417	430	22.2	427	80	6	8262	27	17	13	40	1.88
8095--8459	193	1.9	193	82	2	464	26	18	13	41	1.88
4894--9417	429	10.7	414	81	7	4028	27	17	14	40	1.88
9462--11158	215	7.9	216	79	6	1793	27	18	13	40	1.88
9462--11398	428	4.6	426	85	5	2472	27	17	13	40	1.88
9462--11160	641	2.6	637	81	5	2024	27	18	13	40	1.88
11402--13210	216	8.4	215	83	3	2094	27	18	13	40	1.88
11402--17731	432	14.4	430	68	14	2333	27	17	13	40	1.88
13140--13278	69	2.0	69	91	0	224	30	22	14	33	1.93
13209--15825	216	12.1	216	78	7	2262	27	18	13	40	1.88
13523--13971	236	1.9	239	83	5	599	28	18	12	40	1.87
15893--16011	60	2.0	60	83	3	150	25	13	17	43	1.85
15953--17731	216	8.3	216	81	3	1859	27	17	14	40	1.88
13746--17731	648	6.2	643	71	11	2499	27	17	14	40	1.88
17673--17791	60	2.0	60	86	0	166	24	15	16	43	1.86
17466--17973	276	1.8	276	84	1	687	27	17	14	41	1.88
17733--18360	216	2.9	214	82	2	738	27	17	13	40	1.87
17244--18223	492	2.0	491	85	2	1304	27	16	14	41	1.87
19726--19776	21	2.4	21	96	0	93	25	21	17	35	1.95
21641--21697	26	2.2	26	81	6	62	31	26	15	26	1.96
22448--22614	87	1.9	86	93	1	289	35	20	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22532--22831	95	3.2	90	72	19	216	34	18	20	27	1.96
22602--22915	95	3.2	96	74	13	288	34	17	18	29	1.94
22532--22884	190	1.8	193	86	3	514	34	17	19	28	1.95
23305--23353	13	3.6	14	75	22	50	69	10	0	20	1.17
28072--28542	214	2.2	214	85	3	626	28	16	12	42	1.85
30023--30076	25	2.1	26	86	3	74	59	9	1	29	1.39
36638--36664	7	3.9	7	100	0	54	11	29	0	59	1.32
47099--47161	31	2.0	31	100	0	126	30	12	15	41	1.85
47500--47545	24	1.9	24	90	0	74	52	6	15	26	1.67
48668--48692	11	2.3	11	100	0	50	44	8	20	28	1.79
48847--49764	216	4.3	214	81	5	1026	27	17	14	40	1.88
49138--50268	628	1.8	625	84	2	1563	27	18	13	41	1.88
50102--50421	166	1.9	165	83	3	410	25	21	12	40	1.88
50263--50927	216	3.1	215	81	3	707	26	17	13	41	1.87
50923--60323	216	43.5	215	72	10	5245	28	18	13	40	1.88
52699--55110	215	11.2	215	80	4	2451	28	17	13	40	1.88
50923--63535	430	29.4	429	75	11	6345	28	17	13	40	1.88
55013--55213	104	1.9	104	85	5	273	30	18	12	38	1.88
55111--63542	216	39.8	214	77	7	6906	28	17	13	40	1.88
55111--63542	428	19.9	427	81	6	8447	28	17	13	40	1.88
57158--57531	195	1.9	194	81	3	448	27	19	14	38	1.91
60538--60910	194	1.9	194	83	2	489	27	19	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62168--62523	187	1.9	184	82	6	450	28	14	16	40	1.88
63484--63602	60	2.0	60	83	3	150	24	14	17	43	1.86
63544--64223	214	3.2	213	82	3	810	26	16	14	42	1.86
63054--63999	491	1.9	490	83	1	1234	27	17	14	41	1.87
63544--64223	215	3.2	214	82	2	835	26	16	14	42	1.86
67475--67526	26	2.0	26	81	7	61	32	25	15	26	1.95
68253--68674	95	4.4	95	81	8	498	33	18	20	27	1.96
68253--68758	190	2.6	193	82	6	566	33	18	19	28	1.95
68261--68610	47	7.4	47	67	14	182	33	19	20	26	1.97
68684--68810	50	2.5	50	84	6	159	36	14	14	34	1.87

Tables:   1

The End!