genome.fa.s11054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011054.1 Kokia drynarioides strain JFW-HI SEQ_126025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157414

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179--1305	23	5.4	23	83	11	118	11	22	23	41	1.87
3636--3663	2	14.0	2	100	0	56	50	0	0	50	1.00
4062--4096	18	2.1	17	89	10	54	51	11	5	31	1.61
4692--4757	31	2.0	34	85	8	93	51	13	12	22	1.74
6909--6958	22	2.3	22	82	6	57	68	8	6	18	1.36
6967--7022	12	4.7	12	79	0	58	64	21	7	7	1.43
6965--7010	24	1.9	24	90	0	74	65	21	6	6	1.39
8711--8756	21	2.3	19	85	7	65	69	0	0	30	0.89
8711--8755	20	2.3	19	84	7	54	68	0	0	31	0.89
8719--8785	35	1.9	34	88	8	100	71	1	0	26	0.94
10033--10058	2	13.0	2	100	0	52	50	0	50	0	1.00
15227--15278	27	1.9	27	88	0	77	17	21	1	59	1.47
17244--17310	33	2.0	33	97	0	125	25	20	7	46	1.77
27438--27462	8	3.1	8	100	0	50	88	0	0	12	0.53
27701--27757	22	2.7	22	78	8	64	54	10	0	35	1.35
28633--28669	18	2.1	19	85	10	51	56	0	13	29	1.37
33207--33251	24	1.9	24	86	4	65	55	2	0	42	1.12
38545--38578	6	5.7	6	92	0	59	32	0	64	2	1.08
39592--39655	33	1.9	33	81	6	76	46	1	0	51	1.10
45728--45786	30	1.9	30	83	10	75	37	3	10	49	1.54
47082--47114	16	2.2	16	89	10	52	27	6	0	66	1.15
48744--48813	36	1.9	36	91	0	113	28	11	22	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54059--54099	20	2.0	20	86	9	57	53	4	2	39	1.35
56126--56152	13	2.1	13	100	0	54	85	0	0	14	0.61
56840--56874	2	17.5	2	100	0	70	0	0	51	48	1.00
57081--57106	5	5.2	5	100	0	52	0	80	0	19	0.71
64759--64815	21	2.8	21	81	2	71	52	1	35	10	1.46
71619--71674	23	2.4	23	77	11	62	53	0	1	44	1.11
77630--77669	21	1.9	21	85	10	55	40	35	2	22	1.68
79624--79648	2	12.5	2	100	0	50	48	0	0	52	1.00
81583--81637	23	2.5	22	77	11	58	58	0	5	36	1.21
83926--83958	2	16.5	2	100	0	66	51	0	0	48	1.00
91921--91975	17	3.4	16	75	7	58	43	0	0	56	0.99
91922--91987	16	3.9	17	72	9	64	46	0	1	51	1.10
91911--91981	16	4.6	16	70	14	51	43	0	1	54	1.08
92845--92913	32	2.2	32	81	0	84	49	23	2	24	1.64
100951--100991	14	3.0	14	76	16	50	60	7	2	29	1.36
102923--102958	17	2.1	18	89	5	56	2	2	19	75	1.06
105976--106070	30	3.2	30	92	0	154	58	15	3	22	1.51
108175--108225	23	2.4	22	80	9	61	62	5	0	31	1.19
108212--108263	21	2.5	20	78	6	59	61	0	1	36	1.07
112109--112162	18	2.9	18	76	15	56	31	18	0	50	1.48
112111--112162	19	2.8	19	77	13	54	32	19	0	48	1.49
112231--112266	18	1.9	19	88	5	56	25	22	0	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112922--112971	22	2.3	22	86	6	75	50	4	0	46	1.20
112970--113038	18	3.5	19	72	18	61	49	2	5	42	1.41
112972--113015	21	2.0	21	86	4	61	43	2	6	47	1.42
113008--113051	19	2.3	19	80	7	54	52	2	4	40	1.34
119982--120016	14	2.6	13	90	4	52	22	11	31	34	1.90
119981--120055	20	3.7	20	68	21	57	20	13	30	36	1.91
124594--124632	17	2.3	17	90	0	60	15	12	25	46	1.81
128007--128058	24	2.3	23	83	9	63	17	19	7	55	1.65
132953--132992	12	3.3	12	89	10	64	25	22	0	52	1.47
132917--132980	35	1.9	32	84	9	83	25	23	1	50	1.58
134182--134212	14	2.2	14	100	0	62	22	12	0	64	1.27
135805--135851	19	2.3	20	89	7	69	27	2	4	65	1.22
139037--139067	12	2.6	12	89	0	53	64	0	0	35	0.94
156080--156155	31	2.5	31	86	4	109	46	11	21	21	1.83
156697--156819	61	2.0	61	98	0	237	34	19	8	37	1.83

Tables:   1

The End!