genome.fa.s1107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001107.1 Kokia drynarioides strain JFW-HI SEQ_112387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135090

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--29	2	14.5	2	100	0	58	48	0	0	51	1.00
15337--15367	16	1.9	16	93	0	53	58	0	0	41	0.98
16072--16133	29	2.1	31	84	6	83	32	12	17	37	1.88
17187--17217	5	6.0	5	92	7	53	22	0	0	77	0.77
19123--19152	12	2.4	13	94	5	53	6	0	13	80	0.91
21827--22005	29	6.1	29	76	11	168	29	3	30	36	1.76
21824--22004	58	3.1	59	83	4	206	30	3	30	35	1.76
23773--23844	17	4.1	17	81	3	81	52	1	2	43	1.24
23774--23847	11	6.5	11	77	12	60	55	1	2	40	1.22
25317--25390	36	2.1	36	100	0	148	24	29	14	31	1.95
42534--42568	17	2.1	17	88	0	52	48	14	5	31	1.67
49667--49691	11	2.3	11	100	0	50	92	0	8	0	0.40
50942--50983	13	3.2	13	89	3	57	47	0	2	50	1.14
52723--52765	21	2.0	22	86	4	61	58	2	9	30	1.42
53115--53170	21	2.7	21	82	0	76	30	26	10	32	1.90
62178--62270	46	2.0	46	100	0	186	36	21	9	32	1.86
68193--68280	36	2.4	36	80	0	104	53	11	9	26	1.66
68228--68278	18	2.8	18	78	0	57	54	5	7	31	1.53
75400--75439	19	2.1	19	100	0	80	47	10	20	22	1.79
75436--75610	90	1.9	90	80	2	199	48	12	10	29	1.73
77319--77372	21	2.6	21	96	0	99	24	5	35	35	1.79
78933--78996	30	2.1	30	85	5	83	31	1	15	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86351--86398	21	2.5	20	86	10	64	37	0	43	18	1.51
114839--114973	31	4.3	31	76	4	117	54	1	5	39	1.32
114906--114962	17	3.4	17	70	4	53	56	1	1	40	1.20
119923--120779	38	22.0	42	68	16	354	26	17	25	31	1.97
119909--120539	78	8.1	80	72	15	273	26	16	25	30	1.97
120073--120123	25	2.0	25	88	7	77	39	13	21	25	1.90
120156--120423	78	3.4	78	87	0	385	25	18	24	31	1.98
120114--120618	196	2.6	193	81	5	541	26	17	24	32	1.96
120389--120776	78	4.9	78	83	4	467	25	17	25	31	1.97
121035--121228	30	6.4	30	78	1	199	38	2	21	38	1.65
121021--121229	60	3.5	60	79	1	220	39	2	20	37	1.66
122954--123860	38	23.1	39	72	10	408	26	16	25	31	1.96
123014--123658	81	8.1	80	77	9	438	26	17	24	31	1.97
123133--123520	78	5.0	76	80	7	291	26	17	23	32	1.97
123137--123640	115	4.3	119	74	9	320	26	18	24	31	1.97
123345--123712	196	1.9	194	87	2	540	26	17	24	32	1.97
123137--123860	352	2.1	352	83	4	903	25	17	24	32	1.97
123511--123871	159	2.3	149	78	7	364	26	16	25	32	1.96
123510--123860	78	4.5	78	80	4	340	25	16	25	31	1.97
123979--124066	42	2.1	42	81	8	99	19	21	17	42	1.90
124438--124751	111	2.8	111	90	0	484	39	10	19	29	1.86
130693--131126	59	7.4	58	86	5	527	29	1	29	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130693--131125	175	2.5	175	88	3	647	29	1	30	39	1.67
130697--131126	29	14.7	28	72	17	270	29	1	30	39	1.66
131943--132004	25	2.3	26	81	10	72	27	24	1	46	1.62
132914--132958	22	2.0	22	86	0	63	51	0	2	46	1.13
133221--134437	204	6.0	204	90	1	1823	20	22	19	38	1.94
133221--134437	407	3.0	406	89	1	1853	20	22	19	38	1.94
133231--134437	611	2.0	612	90	1	1936	20	22	19	37	1.94
134916--134960	23	2.0	23	86	0	63	60	11	20	8	1.57

Tables:   1

The End!