genome.fa.s11097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011097.1 Kokia drynarioides strain JFW-HI SEQ_126070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  263116

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2676--2739	31	2.2	30	88	8	96	51	7	0	40	1.31
7675--7753	38	2.1	38	100	0	158	20	21	18	39	1.93
9687--9735	23	2.1	23	85	7	64	32	6	2	59	1.34
10613--10656	22	2.0	23	86	4	63	50	0	2	47	1.13
23837--23901	29	2.2	30	80	5	78	33	21	20	24	1.97
29110--29180	31	2.4	29	83	9	81	43	12	9	33	1.76
29866--29905	21	2.0	21	85	5	55	37	0	5	57	1.21
34885--34932	24	2.0	24	95	0	87	16	12	10	60	1.58
41403--41634	117	2.0	117	99	0	455	28	12	16	42	1.85
48656--48697	15	2.7	16	77	7	50	45	0	0	54	0.99
53562--53636	32	2.4	32	84	6	91	46	2	9	41	1.50
55090--55145	24	2.4	25	85	11	82	37	1	3	57	1.27
68314--68340	5	5.4	5	100	0	54	0	55	0	44	0.99
80901--81000	47	2.1	47	98	0	191	51	14	10	25	1.72
94450--94495	23	1.9	23	86	8	65	23	0	8	67	1.18
94460--94504	23	2.0	23	81	0	54	31	0	2	66	1.04
95559--95609	24	2.1	24	92	0	84	58	11	7	21	1.58
97554--97604	24	2.1	24	88	0	75	56	11	9	21	1.63
110332--110376	23	1.9	24	82	13	58	71	2	24	2	1.09
117982--118065	20	4.1	20	68	17	55	57	2	3	36	1.29
118346--118464	20	5.8	19	76	14	103	36	5	1	56	1.31
128191--128236	21	2.2	21	88	0	65	67	4	2	26	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134950--135082	69	1.9	69	85	0	185	40	10	15	33	1.82
142787--142834	15	3.1	15	78	3	51	72	2	16	8	1.18
143789--143876	6	15.0	6	68	17	51	40	1	4	53	1.29
143801--143876	18	4.4	16	74	14	62	42	1	5	51	1.33
143846--143877	17	1.9	16	93	6	55	53	0	0	46	1.00
145640--145870	29	7.9	29	74	12	161	33	24	4	37	1.76
145662--145959	87	3.4	85	75	12	239	32	25	4	37	1.75
145712--145963	29	8.6	30	72	17	165	32	27	3	35	1.74
145712--145963	58	4.3	58	81	9	239	32	27	3	35	1.74
145769--146017	117	2.1	116	79	8	256	32	25	4	37	1.75
145703--146018	58	5.4	59	80	7	184	32	25	4	37	1.75
154424--154544	62	2.0	62	100	0	242	33	14	25	25	1.94
157613--157849	50	4.7	50	83	3	271	39	18	28	14	1.89
158330--159147	206	4.0	206	88	0	1170	36	18	22	23	1.95
159450--159542	6	16.0	6	72	18	72	43	1	3	52	1.24
159450--159542	35	2.7	35	81	3	116	43	1	3	52	1.24
159450--159542	17	5.4	17	82	5	114	43	1	3	52	1.24
160160--160184	3	8.3	3	100	0	50	64	0	0	36	0.94
161245--161303	28	2.1	28	87	6	84	40	20	0	38	1.53
161242--161555	29	10.7	29	70	15	148	34	24	3	37	1.72
161240--161554	59	5.4	57	80	7	262	34	24	3	37	1.72
163460--163583	59	2.1	59	95	1	223	37	12	2	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173843--173890	18	2.6	18	80	3	51	33	4	2	60	1.27
180963--181034	35	2.1	34	94	2	126	55	8	12	23	1.64
185901--185995	35	2.7	34	78	12	104	25	8	1	65	1.27
187583--187631	23	2.2	22	81	3	53	46	8	6	38	1.58
187591--187640	23	2.2	23	89	3	75	48	6	4	42	1.46
190386--190426	21	1.9	22	85	5	57	46	0	2	51	1.14
196299--196330	15	2.1	16	94	5	57	34	0	0	65	0.93
197655--197687	16	1.9	18	88	11	52	27	9	3	60	1.42
199395--199477	6	14.5	6	69	9	57	44	2	2	50	1.28
199395--199474	17	4.7	17	83	7	83	43	2	2	51	1.28
199395--199474	34	2.4	34	82	4	99	43	2	2	51	1.28
201310--201539	30	7.8	29	79	8	223	36	27	3	32	1.72
201310--201530	59	3.7	57	82	6	262	37	28	2	31	1.71
203395--203475	31	2.7	30	79	9	85	54	16	0	29	1.42
236903--236929	2	13.5	2	100	0	54	48	0	0	51	1.00
244816--244964	72	2.1	72	98	1	291	38	21	9	30	1.85
245594--245642	13	3.5	13	76	13	53	57	2	4	36	1.30
245587--245642	28	2.0	29	89	3	87	57	1	3	37	1.27
252149--252190	20	2.1	20	100	0	84	42	14	16	26	1.86
260521--260555	4	8.8	4	100	0	70	22	0	25	51	1.48

Tables:   1

The End!