genome.fa.s11131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011131.1 Kokia drynarioides strain JFW-HI SEQ_126104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  545426

Tables:   1   2   

This is table  1  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3241--3303	24	2.7	23	78	11	65	47	1	33	17	1.57
7727--7767	18	2.3	18	87	4	57	34	9	4	51	1.56
27570--27599	6	5.0	6	91	0	51	33	3	33	30	1.74
45083--45120	15	2.6	15	83	4	51	60	2	0	36	1.11
46637--46677	20	2.0	20	100	0	82	4	56	19	19	1.60
48383--48569	52	3.6	52	90	1	286	32	24	12	30	1.92
48354--48570	104	2.1	105	88	4	323	32	23	13	30	1.93
55612--55844	52	4.5	52	81	3	245	33	22	14	29	1.94
61295--61345	26	2.0	26	85	7	70	49	5	3	41	1.45
63088--63328	38	6.3	38	79	6	220	32	19	15	32	1.93
63085--63298	114	1.9	114	84	5	290	31	20	15	31	1.94
64823--65302	42	11.4	42	83	2	579	21	8	14	55	1.65
65111--65270	21	7.6	21	68	10	76	20	10	16	53	1.70
65403--65436	16	2.1	16	94	0	59	44	0	23	32	1.54
70256--70337	4	20.5	4	89	0	74	62	2	9	25	1.39
70255--70337	32	2.6	32	98	0	157	61	2	10	25	1.41
70435--70511	30	2.5	31	74	17	79	58	14	0	27	1.37
70704--70751	24	2.0	24	83	0	60	22	14	14	47	1.81
70842--70923	23	3.5	23	80	5	85	34	10	13	41	1.79
78002--78045	22	1.9	22	86	9	61	27	0	2	70	0.99
78002--78047	18	2.5	19	86	10	60	28	0	2	69	1.00
83242--83294	22	2.4	22	90	0	88	33	16	11	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84274--84298	6	4.2	6	100	0	50	84	0	16	0	0.63
89836--89870	16	2.2	17	90	10	56	62	0	11	25	1.28
95173--95272	52	1.9	52	93	0	173	28	23	15	34	1.94
105779--105826	18	2.7	18	80	9	62	31	25	16	27	1.97
118132--118190	25	2.4	24	78	13	66	77	6	10	5	1.10
119333--119484	62	2.5	62	80	9	193	22	2	30	44	1.66
124111--124200	3	30.3	3	97	2	173	32	0	0	67	0.91
135351--135401	21	2.4	21	90	0	84	37	25	7	29	1.84
135351--135407	21	2.7	20	84	10	78	35	28	7	29	1.83
140894--140951	21	2.6	23	76	13	66	53	3	1	41	1.28
142060--142134	31	2.5	30	87	10	100	49	20	9	21	1.76
143771--143810	20	2.0	20	86	13	57	45	0	12	42	1.42
144455--144523	33	2.1	33	100	0	138	43	8	26	21	1.81
146798--146955	51	3.1	51	87	5	207	36	24	15	22	1.94
146798--146879	25	3.2	25	65	3	65	34	23	18	24	1.96
146872--146955	26	3.3	26	66	3	71	39	25	14	21	1.91
151576--151650	37	2.0	37	97	0	141	41	21	12	25	1.87
173693--173831	42	3.3	42	80	4	120	26	23	10	39	1.86
178675--178710	18	1.9	19	88	5	56	55	13	5	25	1.60
181441--181592	71	2.1	71	85	0	205	26	23	26	23	2.00
199004--199037	17	1.9	18	88	5	52	67	5	8	17	1.37
200756--200809	22	2.5	22	100	0	108	37	29	12	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237157--237199	23	2.0	22	86	9	61	46	13	2	37	1.57
243051--243093	21	2.0	21	100	0	86	30	23	13	32	1.93
247029--247069	12	3.4	12	86	0	55	63	0	36	0	0.95
273252--274430	392	3.0	392	89	0	1770	24	17	21	37	1.94
275751--275780	14	2.1	15	93	6	53	76	0	6	16	0.99
282557--282724	73	2.3	73	91	0	282	29	20	19	29	1.97
285500--285546	24	2.0	24	83	8	60	51	6	14	27	1.67
288515--288539	3	8.3	3	100	0	50	64	0	36	0	0.94
292209--292318	51	2.2	51	80	9	127	51	6	1	40	1.38
300707--300758	24	2.2	24	96	0	95	55	9	9	25	1.62
302649--302696	24	2.0	24	91	0	78	56	8	12	22	1.63
306750--306849	27	3.8	27	90	5	168	31	15	25	29	1.95
307037--307371	158	2.1	158	92	2	557	36	16	20	26	1.94
309842--309933	46	2.0	46	100	0	184	36	19	6	36	1.78
310411--310464	21	2.5	21	82	14	58	40	7	0	51	1.30
311988--312033	14	3.2	15	78	9	51	67	4	2	26	1.21
311988--312051	29	2.2	29	80	8	67	67	4	1	26	1.19
316170--316229	23	2.4	26	76	15	65	51	1	8	38	1.42
316295--316327	13	2.6	13	90	4	50	45	0	0	54	0.99
323930--324172	133	1.8	136	90	2	393	44	11	11	32	1.75
327883--327934	21	2.5	21	84	3	61	36	11	21	30	1.89
327899--327939	21	2.0	21	100	0	82	34	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331528--331647	58	2.1	58	91	0	195	33	0	17	49	1.47
331548--331662	58	2.0	58	89	3	178	33	0	17	48	1.47
334454--334497	16	2.8	16	86	6	63	31	4	11	52	1.57
336718--336749	16	2.0	16	93	0	55	53	0	15	31	1.43
337171--337272	27	3.7	27	88	1	123	26	16	21	35	1.95
337254--337371	24	4.9	24	82	2	130	26	21	23	28	1.99
337254--337371	48	2.5	48	85	2	157	26	21	23	28	1.99
338672--338711	20	2.0	20	100	0	80	50	5	15	30	1.65
347380--347410	16	1.9	16	93	0	53	48	0	6	45	1.28
348656--348720	21	3.0	21	84	4	94	23	21	7	47	1.76
348656--348718	22	2.9	22	88	2	92	23	22	6	47	1.74
353166--353200	15	2.2	16	90	5	54	0	22	2	74	0.95
353166--353213	16	3.1	16	85	8	55	2	22	2	72	1.05
353768--353819	19	2.7	20	81	3	61	61	13	7	17	1.54
364872--364909	17	2.2	18	85	4	51	34	2	0	63	1.09
365658--365704	18	2.6	18	89	0	67	10	2	70	17	1.26
365754--365786	15	2.2	15	94	0	57	12	12	66	9	1.44
367454--367484	16	1.9	16	93	0	53	29	0	6	64	1.18
371544--371624	36	2.2	36	84	4	119	32	8	24	34	1.86
372014--372205	59	3.1	59	77	12	204	41	5	17	36	1.72
372073--372216	68	2.1	68	88	0	207	40	5	18	35	1.74
372208--372447	23	10.4	23	86	0	318	33	3	15	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373516--373552	14	2.6	15	83	8	51	64	0	35	0	0.94
373994--374159	71	2.4	69	79	9	185	34	17	5	42	1.72
374271--374302	6	5.3	6	100	0	64	68	0	0	31	0.90
374289--374447	68	2.3	70	84	4	200	47	6	7	38	1.57
374436--374473	19	2.0	20	84	5	51	34	2	7	55	1.43
380086--380178	47	2.0	47	91	0	150	21	24	16	37	1.93
380931--380973	21	2.0	21	95	0	77	53	6	4	34	1.49
383756--383833	33	2.4	32	82	4	102	33	16	21	28	1.95
383788--383979	69	2.8	69	91	1	303	29	11	27	30	1.92
383824--383945	37	3.4	37	78	11	164	28	11	29	30	1.92
383713--383908	102	1.9	101	88	1	293	29	14	26	30	1.95
383945--384022	33	2.4	32	82	6	93	28	12	24	34	1.92
385682--385735	23	2.5	22	82	11	58	38	5	12	42	1.67
386365--386458	43	2.2	43	98	1	179	38	13	21	26	1.91
387132--387157	12	2.2	12	100	0	52	34	7	15	42	1.75
388434--388486	18	2.7	19	77	11	63	32	24	16	26	1.97
389614--389745	28	4.7	28	73	5	88	30	13	19	36	1.91
389656--389802	27	5.4	27	66	8	82	29	13	20	36	1.91
392578--392603	10	2.6	10	100	0	52	11	0	0	88	0.52
394335--394376	18	2.3	18	92	8	68	26	45	9	19	1.80
397569--397619	21	2.3	22	78	18	61	31	1	7	58	1.37
410198--410311	34	3.4	34	78	9	126	49	14	9	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424476--424532	21	2.7	22	81	5	73	35	24	10	29	1.89
425238--425509	42	6.4	42	81	5	278	26	25	10	38	1.88
425238--425509	85	3.2	84	79	6	269	26	25	10	38	1.88
425238--425467	127	1.8	126	84	0	316	27	23	9	38	1.86
433753--433817	34	1.9	34	87	0	94	46	12	9	32	1.73
434073--434158	28	3.0	28	82	1	100	55	9	15	19	1.66
437185--437227	4	10.8	4	89	0	68	53	20	0	25	1.46
438371--438421	5	9.8	5	76	16	50	21	1	0	76	0.88
438368--438422	16	3.4	17	78	12	62	21	1	0	76	0.88
438370--438423	15	3.4	15	76	20	56	22	1	0	75	0.89

Tables:   1   2