genome.fa.s11131.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011131.1 Kokia drynarioides strain JFW-HI SEQ_126104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  545426

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441543--441573	16	1.9	16	93	0	53	51	0	0	48	1.00
444695--444774	30	2.7	28	79	11	88	46	2	1	50	1.23
444695--444772	29	2.6	30	82	11	90	46	2	1	50	1.23
444736--444783	20	2.4	20	86	6	62	47	0	2	50	1.12
445785--445830	14	3.3	14	82	11	67	23	26	21	28	1.99
445778--445851	28	2.6	28	93	0	121	29	25	17	27	1.97
445785--445893	42	2.6	42	78	5	105	26	22	20	30	1.98
445967--446038	28	2.5	29	75	4	83	26	16	25	31	1.96
450115--450165	21	2.4	21	80	0	66	29	5	11	52	1.61
450979--451026	21	2.3	21	85	0	60	27	6	14	52	1.66
451775--451825	21	2.4	21	86	0	75	27	7	13	50	1.69
452223--452278	24	2.3	24	87	0	85	23	16	25	35	1.94
452315--452428	30	3.8	30	75	3	88	29	21	21	28	1.98
452451--452542	43	2.1	44	81	2	105	28	26	18	27	1.98
452549--452584	14	2.6	14	91	4	56	16	27	30	25	1.97
452628--452688	28	2.1	29	85	8	81	22	14	26	36	1.93
455074--455186	23	4.9	23	75	8	79	30	22	9	38	1.86
455085--455186	46	2.2	46	89	3	152	29	21	8	40	1.83
456412--456499	38	2.3	38	83	9	101	29	5	3	61	1.35
456484--456531	15	3.0	16	77	16	55	27	2	0	70	0.98
456449--456530	27	3.0	27	77	12	71	29	2	1	67	1.11
456486--456529	18	2.5	17	82	13	54	25	2	0	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459338--459380	20	2.2	19	83	4	50	46	13	2	37	1.57
459898--459925	14	2.0	14	100	0	56	50	0	0	50	1.00
469185--469265	22	3.5	22	72	12	74	27	3	2	66	1.21
469184--469274	45	2.2	41	79	13	105	26	3	5	64	1.30
469690--469761	34	2.1	34	92	0	117	30	8	5	55	1.52
470164--470200	12	3.1	12	92	0	56	24	0	0	75	0.80
472634--472749	57	2.0	58	96	1	216	40	10	14	34	1.80
472738--472787	22	2.3	22	85	0	64	44	4	16	36	1.66
480679--480748	31	2.2	32	80	12	83	38	21	2	37	1.68
490126--490186	24	2.5	24	91	0	95	39	14	22	22	1.91
496920--497024	52	2.0	52	100	0	210	41	9	5	42	1.61
497087--497144	24	2.4	24	82	0	80	37	13	25	22	1.91
503445--503651	104	2.0	104	81	5	240	37	18	13	30	1.89
503989--504153	60	2.8	58	77	6	143	38	8	20	33	1.83
506020--506403	40	9.8	38	70	16	180	24	16	25	33	1.96
505919--506424	78	6.4	78	87	3	667	24	16	26	32	1.96
505919--506424	157	3.2	156	86	3	678	24	16	26	32	1.96
506572--506628	21	2.8	19	75	15	51	21	28	14	36	1.92
506716--506895	97	1.8	98	89	1	281	22	27	13	36	1.92
506696--506939	49	5.0	49	69	7	156	22	28	13	34	1.93
506954--506985	16	2.0	16	100	0	64	12	31	12	43	1.80
506858--507075	114	1.9	114	84	3	296	21	29	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507029--507146	43	2.5	46	77	13	134	23	27	14	33	1.94
506761--507172	206	2.0	207	86	3	576	21	28	14	35	1.92
507113--507273	49	3.3	48	75	6	153	20	26	14	37	1.92
506986--507255	92	2.9	94	79	4	276	22	26	15	35	1.94
507113--507327	98	2.2	98	90	0	322	20	25	14	38	1.91
507153--507323	49	3.5	49	77	3	191	19	25	16	38	1.92
513581--513620	20	2.0	20	86	13	57	50	2	20	27	1.61
513513--513687	78	2.2	79	90	4	273	49	3	21	25	1.65
513648--513856	59	3.5	60	70	12	171	37	6	21	34	1.80
513648--513853	30	6.9	30	69	10	136	36	6	21	34	1.80
515062--515095	12	2.9	11	91	8	50	20	0	2	76	0.92
517554--517622	28	2.4	29	92	7	122	31	8	18	40	1.81
520168--520197	14	2.1	14	93	0	51	50	0	0	50	1.00
520170--520204	18	2.1	17	89	10	54	42	0	0	57	0.99
520683--520836	30	5.1	30	86	5	204	32	2	22	42	1.67
520683--520836	59	2.6	60	84	7	197	32	2	22	42	1.67
520683--520850	89	1.9	89	83	3	221	34	2	20	42	1.65
521983--522023	20	2.1	19	90	4	64	70	2	2	24	1.11
522109--522151	22	2.0	22	86	9	61	72	2	2	23	1.08
522135--522381	77	3.2	77	98	0	476	35	2	13	48	1.55
523091--523232	50	2.9	49	79	4	133	23	24	18	33	1.96
531730--531789	26	2.3	26	97	0	111	13	26	18	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536883--537165	59	4.8	58	87	4	381	31	4	31	32	1.79
536883--537165	117	2.4	117	86	3	390	31	4	31	32	1.79
536883--537165	29	9.7	29	72	14	206	31	4	31	32	1.79
538475--538757	59	4.8	58	87	4	381	31	4	31	32	1.79
538475--538757	117	2.4	117	86	3	390	31	4	31	32	1.79
538475--538757	29	9.7	29	72	14	206	31	4	31	32	1.79
540335--540388	15	3.6	15	84	0	81	18	14	24	42	1.88
540428--540490	17	3.7	17	91	4	92	52	4	0	42	1.22
540998--541266	139	1.9	139	83	1	351	19	26	18	35	1.95
541280--541899	139	4.5	138	93	1	997	20	24	18	37	1.94

Tables:   1   2

The End!