genome.fa.s11163.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011163.1 Kokia drynarioides strain JFW-HI SEQ_126137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  614243

Tables:   1   2   

This is table  2  of  2  ( 217 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343275--343617	171	2.0	171	97	0	641	47	13	11	27	1.77
345187--345227	12	3.2	12	83	10	55	56	4	0	39	1.21
345189--345234	14	3.4	14	82	17	62	60	6	0	32	1.22
345371--345411	12	3.2	12	83	10	55	56	4	0	39	1.21
345373--345418	14	3.4	14	82	17	62	60	6	0	32	1.22
345182--345549	184	2.0	184	99	0	727	36	16	10	36	1.83
346714--346856	72	2.0	72	98	0	277	43	7	7	41	1.62
348532--348599	33	2.1	33	86	5	93	36	27	16	19	1.93
366790--366896	9	11.6	9	70	16	67	31	0	5	61	1.25
366792--366832	21	1.9	22	85	5	57	36	2	2	58	1.24
368726--368785	26	2.3	26	82	5	68	15	25	21	38	1.92
368765--368826	22	2.8	22	80	7	63	12	20	24	41	1.87
370256--370296	2	20.5	2	100	0	82	48	0	0	51	1.00
375126--375157	12	2.7	12	95	0	55	34	31	15	18	1.93
379313--379343	2	15.5	2	93	0	53	48	3	0	48	1.17
380365--380403	19	2.2	17	86	9	51	0	41	2	56	1.13
381767--382048	24	11.8	24	79	0	249	28	15	25	31	1.95
383307--383378	21	3.3	21	64	17	56	20	34	19	25	1.96
383303--383390	45	2.0	45	97	0	167	21	35	17	26	1.95
390851--390885	15	2.3	15	90	9	54	82	0	17	0	0.66
390854--390889	11	3.2	12	81	18	51	80	0	19	0	0.71
394563--394628	34	1.9	34	81	6	80	21	19	12	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395195--395233	7	5.4	7	81	6	51	82	0	17	0	0.68
395194--395233	15	2.7	15	84	3	55	82	0	17	0	0.67
407684--408320	333	1.9	333	83	6	837	37	10	21	30	1.87
410107--410154	13	3.5	13	80	5	51	6	14	2	77	1.06
417244--417288	15	2.8	17	75	21	51	4	20	0	75	0.97
420246--420288	20	2.2	20	87	8	61	69	2	13	13	1.28
437799--438042	121	2.0	120	98	0	470	28	27	14	29	1.95
439149--439195	21	2.2	21	92	0	76	57	12	29	0	1.36
439931--439957	11	2.5	11	100	0	54	81	0	18	0	0.69
444109--444503	29	13.6	29	71	14	169	34	5	26	33	1.79
444189--444530	59	5.9	58	73	11	254	35	3	26	34	1.73
444193--444526	58	5.7	58	74	10	245	35	2	26	34	1.72
444311--444530	88	2.5	88	79	13	208	33	2	28	36	1.70
444313--444655	30	11.7	29	76	12	190	34	2	25	37	1.69
446354--446419	17	3.8	17	83	2	78	56	3	1	39	1.24
446948--447063	49	2.4	49	92	0	187	22	25	14	37	1.92
446997--447956	209	4.6	209	88	1	1246	23	22	17	36	1.95
450282--450339	21	2.8	21	84	7	66	1	10	5	82	0.89
450293--450339	11	4.6	10	84	12	60	0	12	2	85	0.70
450305--450339	10	3.6	10	88	3	54	0	14	0	85	0.59
450293--450339	19	2.3	19	89	10	67	0	12	2	85	0.70
453806--454192	30	13.2	29	71	16	155	35	3	24	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453826--454102	29	9.6	29	70	12	124	37	3	23	35	1.73
453891--454130	57	4.1	58	80	10	206	33	2	25	38	1.69
453953--454048	28	3.4	29	77	9	72	34	3	26	36	1.72
454068--454256	60	3.2	59	78	6	159	36	2	22	39	1.66
454035--454258	30	7.5	29	74	10	130	35	2	22	39	1.66
454067--454258	90	2.1	89	80	8	219	35	2	21	40	1.66
456056--456154	17	5.8	17	75	3	101	53	5	3	38	1.38
456066--456154	34	2.6	33	86	8	126	56	5	3	34	1.40
456691--456808	49	2.4	49	92	0	191	24	22	17	35	1.95
456543--457015	259	1.8	259	82	1	617	23	21	17	37	1.94
456733--457695	209	4.6	209	86	0	1239	22	21	18	37	1.94
458919--458953	7	5.0	7	86	13	54	0	14	0	85	0.59
458995--459060	11	5.9	10	77	20	60	1	10	4	83	0.86
458996--459060	14	4.7	14	80	3	62	1	10	4	83	0.87
459015--459060	24	1.9	24	90	0	74	0	15	2	82	0.76
463380--463512	59	2.2	59	81	9	146	35	3	22	38	1.72
463386--463642	30	8.8	27	75	14	131	33	3	26	37	1.73
463347--463642	30	10.1	29	75	14	111	32	4	27	36	1.76
463435--463562	59	2.2	58	87	5	177	31	5	28	35	1.80
463455--463635	59	3.1	59	78	12	167	32	4	27	35	1.77
463526--463642	60	2.0	58	83	6	146	32	3	27	36	1.74
465395--465494	17	5.8	17	75	1	92	53	4	5	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465405--465494	34	2.6	33	82	6	117	55	4	5	34	1.43
482824--482918	45	2.1	45	92	0	154	28	17	24	29	1.97
508870--508909	21	2.0	20	85	5	53	30	15	10	45	1.78
510044--510090	24	2.0	24	87	4	69	25	8	10	55	1.62
510325--510369	18	2.6	18	78	3	56	31	22	22	24	1.99
511138--511193	21	2.7	20	75	8	58	32	10	26	30	1.90
514156--514211	20	2.8	20	83	2	69	35	7	12	44	1.70
516512--516544	16	2.1	15	94	5	57	15	15	24	45	1.84
518432--518525	45	2.1	45	97	0	179	29	17	13	39	1.88
520021--520210	94	2.0	94	100	0	380	39	18	12	29	1.88
525306--525330	2	12.5	2	100	0	50	52	0	48	0	1.00
529172--529219	17	2.9	17	81	3	53	52	14	12	20	1.74
535786--535832	21	2.2	21	84	0	58	10	12	31	44	1.77
539184--539267	36	2.3	36	79	0	87	8	35	13	42	1.74
541876--541922	23	2.0	23	83	0	58	48	23	4	23	1.68
544922--544993	32	2.2	33	80	9	85	33	8	9	48	1.66
551557--551587	16	1.9	16	93	0	53	61	0	16	22	1.34
552385--552434	26	1.9	26	91	0	82	28	24	20	28	1.99
552411--552474	33	1.9	33	96	0	119	23	21	21	32	1.98
554389--554430	21	2.0	22	85	4	59	11	21	4	61	1.48
573586--573617	17	1.9	17	93	6	57	0	18	0	81	0.70
574204--574253	17	2.9	17	84	0	64	48	12	16	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574732--574771	21	1.9	21	84	0	53	10	35	15	40	1.80
587681--587729	24	2.0	24	96	0	89	32	18	8	40	1.80
593250--593337	42	2.1	42	89	4	133	23	26	10	39	1.86
593313--593360	23	2.1	23	100	0	96	20	31	16	31	1.95
593274--593404	65	2.0	65	89	2	201	25	28	10	35	1.89
595793--595835	22	2.0	22	81	9	52	34	0	13	51	1.42
603063--603102	17	2.4	17	87	4	55	52	10	15	22	1.71
606808--606910	51	2.0	51	100	0	206	32	19	9	38	1.84
611499--611869	197	1.9	197	98	0	715	40	11	20	28	1.86

Tables:   1   2

The End!