genome.fa.s11201.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011201.1 Kokia drynarioides strain JFW-HI SEQ_126178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74716

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129--187	31	1.9	31	86	6	84	37	8	0	54	1.31
864--927	6	11.2	6	76	15	64	51	3	1	43	1.26
832--927	17	5.6	16	78	17	95	50	3	3	43	1.33
4838--4879	19	2.2	19	86	0	57	23	2	7	66	1.28
7172--7241	28	2.4	30	80	7	81	34	12	24	28	1.92
7307--7559	59	4.3	57	79	11	230	37	2	21	37	1.68
7331--7555	30	7.7	30	75	11	180	36	2	23	38	1.69
7365--7562	30	6.8	29	78	14	203	37	2	21	38	1.67
7307--7567	29	8.9	28	71	16	165	37	2	22	37	1.69
7307--7562	88	2.9	85	79	15	272	37	2	21	37	1.68
7411--7582	59	2.9	59	82	10	151	38	2	22	36	1.69
9367--9456	17	5.3	17	78	0	90	55	8	2	33	1.43
9838--11270	209	6.9	209	87	3	1976	22	22	18	36	1.95
11140--11369	121	1.9	121	93	0	397	22	23	18	35	1.96
11413--11535	48	2.6	48	82	0	165	26	21	14	37	1.92
11260--11741	257	1.9	257	84	2	646	24	22	17	36	1.95
11848--11982	39	3.6	39	70	15	129	23	20	29	25	1.98
11838--11987	74	2.0	73	97	1	282	25	19	28	26	1.98
11974--12611	78	8.2	79	80	3	571	28	19	28	24	1.98
12039--12489	39	11.6	39	68	5	194	28	20	28	23	1.99
12601--12741	41	3.4	41	84	1	174	33	16	17	33	1.92
12895--13084	99	1.9	99	81	4	231	17	30	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901--13134	49	4.8	49	79	3	202	14	30	20	33	1.93
14041--14120	18	4.5	17	82	13	74	6	15	1	77	1.02
14055--14120	19	3.6	18	85	8	80	7	13	0	78	0.94
14064--14103	11	3.5	11	87	12	55	7	12	0	80	0.91
14057--14114	29	2.0	30	82	3	73	6	15	0	77	0.97
18745--18777	2	16.5	2	100	0	66	0	0	48	51	1.00
19766--20102	59	5.7	58	77	12	287	33	3	27	35	1.73
19779--20102	30	10.9	30	77	9	220	34	3	27	35	1.73
19766--20096	89	3.7	87	78	11	359	34	3	26	35	1.72
21167--21231	18	3.7	18	75	4	53	33	6	6	53	1.50
21900--21925	11	2.4	11	100	0	52	46	7	0	46	1.31
21905--21945	6	7.2	6	78	10	50	48	4	0	46	1.23
21905--21945	17	2.4	17	92	8	66	48	4	0	46	1.23
22324--22729	206	2.0	206	88	0	605	23	22	18	35	1.96
34869--35257	30	13.1	30	83	5	424	33	2	28	35	1.71
34846--35252	59	6.9	60	80	9	426	34	2	27	35	1.70
36348--36412	18	3.7	18	75	4	53	33	6	6	53	1.50
36395--36443	3	16.3	3	87	8	73	30	0	4	65	1.11
37066--37111	11	4.1	11	83	5	56	50	4	0	45	1.21
37071--37111	6	7.2	6	83	10	59	51	2	0	46	1.14
37071--37111	17	2.4	17	92	8	66	51	2	0	46	1.14
37066--37150	17	4.8	17	72	14	64	50	5	4	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37749--37804	30	1.9	30	85	3	78	35	8	26	28	1.87
37772--38075	30	10.5	29	68	18	134	34	3	25	36	1.73
37845--37987	58	2.4	58	80	10	141	33	2	27	37	1.69
37772--37949	87	2.1	86	81	7	209	35	3	25	35	1.73
37863--37987	58	2.2	58	81	8	148	32	0	26	40	1.62
37811--38068	87	3.0	86	79	10	247	33	3	27	36	1.73
37882--38031	58	2.6	55	80	11	158	32	2	29	36	1.69
37792--38088	29	10.3	29	68	17	111	32	3	27	36	1.72
37917--38095	30	6.1	30	70	21	121	34	2	27	35	1.72
37917--38096	29	6.1	29	69	21	117	33	2	27	36	1.71
39923--40012	17	5.3	17	83	0	108	56	6	2	34	1.38
40921--40957	15	2.4	16	86	8	51	70	2	0	27	1.01
41001--41061	15	4.3	14	76	19	63	73	1	6	18	1.12
41001--41066	28	2.2	30	84	10	82	72	1	7	18	1.15
44441--44703	30	8.8	30	76	8	196	38	2	22	36	1.67
44441--44703	60	4.4	58	76	11	217	38	2	22	36	1.67
44458--44627	90	1.9	91	86	3	245	39	1	25	33	1.66
44444--44735	91	3.2	90	78	6	270	39	2	22	35	1.66
44438--44733	30	9.9	29	73	10	177	38	2	22	36	1.66
45445--45497	16	3.4	15	78	14	54	16	1	3	77	1.01
46607--46932	124	2.6	125	82	5	394	23	21	15	38	1.92
46899--46969	37	1.9	37	91	0	115	23	21	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46784--47303	160	3.2	159	83	8	693	23	20	17	37	1.94
46944--47263	171	1.9	171	90	2	518	23	20	16	38	1.93
47230--47300	37	1.9	37	85	5	99	25	21	18	35	1.95
47066--47547	208	2.3	208	91	2	765	22	21	16	38	1.93
47183--47348	85	2.0	85	85	2	226	24	23	16	36	1.94
47390--47638	83	3.0	83	82	4	277	22	22	16	39	1.92
47066--48053	498	2.0	500	89	2	1540	22	21	16	38	1.93
47183--47846	290	2.3	292	87	3	960	22	21	16	38	1.93
47680--47846	85	2.0	85	87	2	246	23	23	15	36	1.94
47475--48791	207	6.4	207	86	1	1795	22	21	16	39	1.92
47531--49188	415	4.1	414	86	4	2149	23	20	16	39	1.92
47888--48053	85	2.0	84	84	1	215	23	21	16	39	1.92
48095--48261	85	2.0	85	84	4	221	23	22	16	38	1.93
48180--48925	330	2.3	325	80	7	787	24	20	15	39	1.92
48511--48676	85	2.0	85	86	0	233	24	22	15	37	1.93
48595--49133	123	4.3	123	76	10	545	24	20	15	39	1.91
48850--48969	48	2.5	48	97	0	222	28	23	10	37	1.88
48389--49008	330	1.9	325	87	7	901	23	20	15	39	1.91
48895--49050	85	1.8	85	87	5	235	25	24	12	37	1.91
48718--49177	256	1.8	255	86	3	674	25	20	14	39	1.91
49037--49367	160	2.1	160	83	3	416	23	19	16	40	1.91
61769--61941	29	5.9	28	78	9	177	32	4	31	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61769--61942	59	3.0	57	86	8	217	32	4	31	32	1.78
63773--63851	6	13.8	6	70	19	53	54	2	1	41	1.22
63775--63851	17	4.5	18	85	4	90	55	2	1	40	1.22
63775--63851	34	2.3	34	84	4	102	55	2	1	40	1.22
64545--64598	27	2.0	27	100	0	108	22	22	18	37	1.95
64338--64805	234	2.0	234	94	0	819	20	22	19	37	1.94

Tables:   1

The End!