genome.fa.s11252.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011252.1 Kokia drynarioides strain JFW-HI SEQ_126230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  407021

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328852--329201	60	5.9	60	77	11	276	34	25	3	36	1.73
328842--329226	59	6.5	58	75	12	248	34	24	3	37	1.72
329488--329674	98	1.9	98	83	6	245	33	14	12	40	1.83
333743--333823	40	2.0	40	95	4	146	32	18	22	27	1.97
340898--341467	49	11.7	48	78	4	390	39	20	24	15	1.92
340898--341506	97	6.2	95	78	7	435	39	20	24	16	1.92
340894--341480	146	4.0	146	84	3	746	39	20	24	16	1.92
341942--342015	6	12.8	6	68	18	50	41	5	2	50	1.39
341912--341968	29	2.0	29	85	0	78	29	0	10	59	1.31
341930--341989	17	3.4	18	86	9	79	36	1	5	56	1.31
342652--342697	3	15.7	3	82	13	60	28	4	0	67	1.10
343879--343987	29	3.8	30	73	8	84	33	26	3	35	1.74
344000--344157	29	5.3	29	68	13	106	33	26	2	37	1.70
343940--344167	60	3.9	59	83	4	273	31	25	2	40	1.69
343888--344203	59	5.3	59	79	9	281	31	26	3	38	1.73
343885--344230	119	2.9	117	81	7	373	30	26	4	38	1.76
355827--355859	17	1.9	17	93	0	57	21	18	9	51	1.73
357136--357209	38	1.9	38	91	0	121	27	31	17	24	1.97
370012--370077	33	2.0	33	100	0	132	30	15	18	36	1.91
375239--375268	15	2.0	15	93	0	51	16	30	0	53	1.44
378437--378515	39	2.1	38	90	2	122	46	17	3	31	1.66
382436--382505	34	2.1	34	83	0	86	22	20	8	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382482--382522	18	2.3	18	87	4	57	24	19	9	46	1.80
390446--390491	22	2.0	23	84	12	60	67	0	21	10	1.21
391404--391454	25	2.0	25	100	0	102	15	29	3	50	1.62
396491--396559	36	1.9	36	91	5	113	42	0	4	53	1.20
396755--396785	9	3.4	9	100	0	62	35	9	9	45	1.70
401209--401251	18	2.4	18	88	7	61	46	0	0	53	1.00
402122--402164	21	2.0	21	86	4	59	44	0	0	55	0.99
404669--404844	90	1.9	91	80	5	205	31	17	12	38	1.87
406746--406819	30	2.5	29	78	8	78	56	2	1	39	1.22

Tables:   1   2

The End!