genome.fa.s11285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011285.1 Kokia drynarioides strain JFW-HI SEQ_126264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51725

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276--321	23	2.0	23	91	0	74	52	8	10	28	1.66
299--5661	215	25.3	213	77	10	4482	39	13	17	29	1.88
299--5661	429	12.6	430	78	8	4925	39	13	17	29	1.88
3877--3922	23	2.0	23	95	0	83	50	8	15	26	1.73
307--5661	862	6.3	839	80	8	4012	39	13	17	29	1.88
7468--12566	215	23.9	215	78	6	4615	39	13	17	29	1.88
8523--8911	195	2.0	194	82	6	466	40	13	15	30	1.86
8717--12568	431	9.0	427	81	4	3841	39	13	17	29	1.88
7194--29188	839	25.6	856	74	10	10826	38	14	17	29	1.89
12550--12576	12	2.2	12	100	0	54	48	0	11	40	1.39
12921--12993	39	1.9	38	86	5	103	26	4	17	52	1.63
14041--29188	215	71.1	214	77	7	12785	39	13	17	29	1.88
14030--48720	429	80.2	429	71	13	15324	39	14	16	29	1.88
14030--29188	625	23.7	627	75	10	9309	39	13	17	29	1.88
18882--19242	195	1.9	194	82	8	455	38	12	18	30	1.88
29118--29271	83	1.9	83	85	0	218	40	9	20	29	1.84
29189--31701	215	11.9	215	76	8	1870	39	14	17	29	1.88
31559--31841	139	2.0	140	90	0	451	45	14	14	26	1.82
31356--32051	350	2.0	353	86	2	968	41	14	16	28	1.87
31141--32267	565	2.0	568	83	2	1435	40	14	16	28	1.87
31698--34077	215	11.2	214	79	5	2277	39	14	16	29	1.88
30719--32693	996	2.0	976	80	5	2225	40	14	16	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33116--33939	214	4.0	196	74	14	624	38	15	16	29	1.89
32696--33938	625	2.0	624	83	4	1567	39	15	16	29	1.89
34199--34580	196	2.0	193	82	4	473	39	13	17	30	1.88
34412--35595	215	5.5	214	81	4	1206	40	14	16	28	1.88
34544--35588	428	2.4	430	83	3	1257	40	14	16	28	1.88
35248--35925	345	2.0	347	87	2	990	40	14	15	29	1.87
35069--36154	559	1.9	558	83	4	1411	40	14	16	29	1.87
35616--38355	214	12.8	215	79	4	2568	39	13	17	29	1.87
37529--48407	215	51.9	194	68	17	1469	39	14	16	29	1.88
38154--38549	194	2.0	194	85	2	528	41	14	16	27	1.87
38348--41562	214	15.1	214	79	5	3201	39	14	16	29	1.88
42007--43506	215	7.0	215	80	2	1559	39	14	16	29	1.88
41917--48720	428	16.1	427	78	7	5814	39	14	16	29	1.88
43309--44260	196	4.7	191	72	16	562	38	14	17	29	1.89
43505--48222	215	22.4	213	75	9	3370	39	14	16	29	1.88
43976--44756	214	3.8	195	76	13	614	41	13	16	28	1.86
45716--48637	410	7.0	409	76	10	2181	39	14	16	29	1.88
47207--48720	215	7.2	212	77	8	1216	40	14	16	29	1.88
49661--50055	201	2.0	198	81	5	458	39	13	17	29	1.88
51058--51090	17	1.9	17	88	11	50	27	0	6	66	1.15

Tables:   1

The End!