genome.fa.s11306.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011306.1 Kokia drynarioides strain JFW-HI SEQ_126286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  547520

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327354--327388	17	2.1	17	89	10	54	77	0	5	17	0.96
328555--328636	39	2.1	39	97	0	155	46	7	25	20	1.76
329417--329580	27	6.2	26	77	11	154	34	15	23	26	1.95
329417--329580	53	3.1	52	83	10	206	34	15	23	26	1.95
329435--329602	27	6.3	26	73	17	107	35	16	21	26	1.95
330652--331247	306	1.9	306	95	0	1084	36	13	14	36	1.85
333116--333154	5	7.8	5	94	0	51	20	7	33	38	1.81
338725--338753	2	14.5	2	100	0	58	0	0	48	51	1.00
346396--346456	24	2.5	24	83	0	77	50	13	11	24	1.74
358593--358635	20	2.2	20	83	8	52	32	18	2	46	1.62
366687--366804	44	2.8	44	81	14	133	35	22	0	41	1.54
366650--366785	44	3.1	42	80	11	139	36	22	0	40	1.60
368301--368473	96	1.8	95	81	10	221	65	6	5	21	1.39
371895--371966	33	2.2	33	85	5	92	33	20	23	22	1.97
372041--372113	28	2.6	28	84	0	101	32	19	30	17	1.95
373690--373752	30	2.1	30	90	0	99	23	3	15	57	1.53
375941--375976	18	2.1	17	89	5	54	11	22	33	33	1.89
380032--380092	29	2.0	30	81	12	72	62	4	4	27	1.37
380508--380556	4	12.0	4	83	12	64	69	2	0	28	1.00
380509--380556	13	3.9	13	91	5	66	68	2	0	29	1.01
380786--380838	24	2.2	24	80	6	63	39	7	7	45	1.61
381429--381612	50	3.7	50	81	6	160	20	18	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381476--382030	49	11.3	49	78	4	451	20	18	18	42	1.89
381486--382030	98	5.6	97	77	6	503	20	18	17	42	1.89
391121--391161	19	2.4	16	88	12	55	46	9	19	24	1.80
411562--411612	21	2.4	21	80	6	59	33	27	13	25	1.94
416560--416625	19	3.4	18	73	10	51	66	7	4	21	1.35
416748--416784	18	2.1	18	94	0	65	21	5	2	70	1.20
418401--418430	12	2.5	12	100	0	60	53	20	0	26	1.46
421685--421754	23	3.0	23	74	2	68	42	17	12	27	1.85
421844--421890	12	4.0	11	81	13	58	51	17	17	14	1.77
421845--421892	24	2.0	24	95	0	87	47	16	16	18	1.82
427701--427763	24	2.7	24	85	2	83	44	20	11	23	1.83
432269--432320	20	2.6	20	87	0	68	26	11	32	28	1.91
434006--434399	194	2.0	194	95	0	698	22	25	16	35	1.95
435296--435336	20	2.1	19	86	4	55	31	9	21	36	1.86
435547--435591	20	2.2	20	88	0	63	24	15	33	26	1.95
435559--435596	20	1.9	20	88	0	58	28	13	31	26	1.93
440602--440645	21	2.1	21	86	0	61	36	22	9	31	1.86
441335--441525	41	4.6	41	81	5	188	23	25	11	39	1.88
447943--448054	41	2.7	43	82	9	119	23	26	7	42	1.79
448027--448081	27	2.0	27	82	0	65	21	29	1	47	1.61
448069--448191	43	2.9	43	90	0	192	24	25	12	38	1.90
451232--451492	23	11.3	23	85	1	290	35	5	13	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451230--451492	69	3.8	69	84	2	348	34	5	13	46	1.67
460428--460452	13	1.9	13	100	0	50	36	8	8	48	1.62
480151--480223	37	2.0	37	94	0	128	24	24	21	28	1.99
479978--480439	248	1.9	248	91	0	753	27	21	19	30	1.97
491824--491865	19	2.2	20	86	4	59	45	14	2	38	1.58
494001--494073	28	2.6	29	86	4	105	23	30	10	35	1.89
494001--494082	28	2.9	27	82	10	94	23	30	10	35	1.89
514584--514618	17	2.0	18	94	5	63	42	17	5	34	1.73
519451--519539	43	2.1	43	97	0	169	32	6	22	38	1.80
521247--521292	23	2.0	23	100	0	92	60	13	4	21	1.49
522109--522143	18	1.9	18	88	0	52	42	14	14	28	1.84
526371--526409	17	2.2	18	86	4	53	69	0	0	30	0.89
526336--526408	20	3.4	21	71	14	60	65	0	2	31	1.06
535261--535459	56	3.6	56	79	7	199	24	12	25	37	1.91
537176--537358	56	3.3	56	82	3	183	24	15	25	34	1.94
547430--547474	15	3.0	15	76	0	54	71	11	0	17	1.14

Tables:   1   2

The End!