genome.fa.s11312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011312.1 Kokia drynarioides strain JFW-HI SEQ_126292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152013

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6072--6155	44	1.9	43	90	2	132	38	22	8	30	1.84
9015--9044	12	2.5	12	94	0	51	0	30	0	70	0.88
27148--27193	24	1.9	24	82	8	58	28	8	17	45	1.78
37088--37121	17	1.9	18	88	5	52	50	14	0	35	1.44
40804--40842	19	2.0	20	90	9	64	12	5	2	79	1.00
44595--44674	39	2.1	39	95	0	142	31	22	20	26	1.98
47623--47653	2	15.5	2	100	0	62	51	0	0	48	1.00
48580--48696	62	1.9	61	86	5	166	51	4	2	41	1.35
48672--48768	17	5.7	17	68	26	71	52	2	3	42	1.28
48670--48773	12	8.9	12	69	20	53	52	1	2	42	1.27
50049--50081	11	2.8	12	86	4	50	51	12	3	33	1.54
52083--52151	36	1.9	36	96	0	129	55	11	8	24	1.64
54115--54506	97	4.0	98	88	2	592	46	11	11	30	1.75
54115--54506	195	2.0	195	89	2	599	46	11	11	30	1.75
54758--54787	3	10.0	3	100	0	60	33	0	33	33	1.58
62151--62189	18	2.2	18	86	9	53	5	10	0	84	0.76
62537--62626	26	3.3	26	72	17	83	23	11	6	58	1.55
62536--62666	59	2.2	61	84	8	182	25	12	8	53	1.67
62907--63033	32	4.2	31	72	10	109	48	11	15	24	1.77
62853--63033	91	2.0	90	86	8	253	47	12	16	24	1.80
64134--64202	20	3.3	20	85	4	84	47	11	7	33	1.67
67482--67538	30	1.9	30	88	0	87	10	31	33	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69330--69386	18	3.2	18	85	2	80	75	0	8	15	1.04
69330--69387	6	9.7	6	92	0	71	75	0	8	15	1.02
69427--69464	19	2.0	19	85	10	51	71	2	2	23	1.12
71452--71495	20	2.2	20	84	4	54	72	4	0	22	1.02
75997--76071	37	2.0	37	82	10	91	37	8	12	42	1.71
78819--78902	43	1.9	44	85	7	118	36	10	26	26	1.89
78888--78917	15	2.0	15	100	0	60	46	0	40	13	1.43
78903--79030	42	3.0	42	87	0	175	39	7	25	26	1.83
79613--79666	21	2.6	21	96	0	99	27	9	24	38	1.86
79705--79760	21	2.7	21	72	5	51	30	10	25	33	1.90
80612--80660	25	2.0	25	87	0	71	57	0	8	34	1.29
83038--83078	18	2.3	18	84	12	50	43	2	7	46	1.44
87202--87265	24	2.7	23	82	2	74	42	18	12	26	1.86
87275--87306	15	2.1	15	94	0	55	75	15	0	9	1.05
99812--99864	25	2.1	25	82	6	63	39	28	13	18	1.88
113602--113636	2	18.0	2	88	5	54	51	2	0	45	1.16
116453--116483	16	1.9	16	93	0	53	61	0	16	22	1.34
117282--117334	26	2.0	26	88	0	79	28	20	22	28	1.99
121819--122106	53	5.5	53	83	4	298	27	13	23	35	1.93
121814--122106	106	2.8	105	83	3	351	27	13	23	35	1.93
122623--122673	21	2.4	21	100	0	102	33	21	21	23	1.97
131722--131809	44	2.0	46	84	8	119	40	5	19	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131811--131848	18	2.1	18	90	5	58	63	0	21	15	1.31
134080--134137	25	2.3	25	81	0	71	55	24	8	12	1.64
142867--142896	2	15.0	2	100	0	60	50	0	0	50	1.00
146532--146563	2	16.5	2	93	6	57	50	0	0	50	1.00
151098--151123	11	2.4	11	100	0	52	69	0	7	23	1.14
151971--152002	3	11.0	3	93	6	57	31	0	0	68	0.90

Tables:   1

The End!