genome.fa.s11373.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011373.1 Kokia drynarioides strain JFW-HI SEQ_126354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  611466

Tables:   1   2   

This is table  2  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362238--362293	18	3.0	18	87	10	69	57	14	10	17	1.65
364567--364606	16	2.5	16	84	11	55	75	0	15	10	1.05
371923--372069	50	3.0	48	67	14	136	23	17	21	37	1.94
372029--372186	50	3.1	50	65	8	140	26	16	18	37	1.92
371857--372352	101	5.0	101	79	8	550	27	16	19	37	1.92
373222--373276	20	2.8	20	75	22	62	1	23	0	74	0.91
373227--373275	12	4.0	12	79	10	55	2	20	0	77	0.87
374167--374221	15	3.7	15	82	7	67	0	12	1	85	0.68
374167--374221	8	7.2	8	76	12	53	0	12	1	85	0.68
374167--374215	14	3.4	14	82	5	62	0	14	0	85	0.59
375095--375125	3	10.7	3	93	6	55	29	0	0	70	0.87
377249--377280	16	2.0	16	100	0	64	0	18	12	68	1.20
384356--384417	27	2.3	27	100	0	124	40	17	0	41	1.50
384368--384426	27	2.2	27	87	3	84	32	23	0	44	1.54
385274--385298	12	2.1	12	100	0	50	8	0	8	84	0.79
387947--387992	21	2.4	19	85	10	58	73	10	2	13	1.17
388007--388075	23	3.1	23	78	14	56	72	5	0	21	1.05
388043--388076	18	1.9	17	94	5	59	76	2	0	20	0.92
388021--388093	8	9.3	7	73	20	56	75	5	0	19	0.99
388410--388545	68	2.0	69	91	1	220	47	13	19	19	1.82
390184--390224	20	2.0	20	100	0	82	26	0	9	63	1.25
390652--390687	14	2.5	15	90	4	56	2	2	5	88	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391355--391388	12	2.8	12	86	0	50	0	26	0	73	0.83
408441--408475	18	1.9	18	88	0	52	22	20	20	37	1.95
415019--415043	11	2.3	11	100	0	50	92	0	8	0	0.40
419566--419731	82	2.0	82	100	0	332	25	18	9	46	1.79
432507--432714	109	1.9	112	84	5	280	41	16	9	32	1.81
433083--433120	18	2.2	17	90	4	58	76	0	2	21	0.91
433620--433686	29	2.3	29	92	2	109	22	34	0	43	1.54
437886--437934	15	3.3	15	80	11	55	69	0	28	2	1.00
439867--440914	39	26.1	39	74	10	727	25	17	28	29	1.97
439851--440916	81	13.2	81	80	6	1082	25	16	28	29	1.97
440124--440183	30	2.0	31	93	3	104	26	13	35	25	1.93
441141--441512	49	7.6	49	78	5	322	18	25	16	38	1.92
441190--441512	98	3.3	98	84	0	405	18	26	17	38	1.92
441171--441515	147	2.3	147	81	2	370	19	25	17	37	1.93
442253--442357	7	15.0	7	79	10	101	0	20	0	78	0.87
442255--442349	6	14.3	6	77	16	82	1	18	1	78	0.86
442253--442359	13	8.0	13	75	19	78	0	19	0	78	0.86
442254--442360	19	5.3	20	73	14	87	0	18	0	79	0.84
445525--445750	103	2.2	105	82	3	262	42	17	11	29	1.84
446667--446733	28	2.4	28	87	2	98	19	38	1	40	1.61
447629--447671	17	2.5	18	85	11	54	9	2	13	74	1.16
447846--447882	14	2.5	15	86	8	58	37	0	5	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449859--449883	13	1.9	13	100	0	50	24	16	12	48	1.79
450701--450746	21	2.2	21	88	0	65	32	17	17	32	1.93
451938--451981	21	2.1	21	95	0	79	31	13	20	34	1.92
453241--453284	21	2.1	21	95	0	79	31	13	20	34	1.92
455738--455781	21	2.1	21	86	0	61	29	15	18	36	1.92
460978--461021	21	2.1	21	86	0	61	31	13	20	34	1.92
470728--470773	21	2.2	21	96	0	83	32	13	19	34	1.90
470687--470815	63	2.0	64	89	1	197	34	13	23	27	1.93
472077--472120	21	2.1	21	91	0	70	34	11	20	34	1.88
472034--472162	63	2.0	64	87	1	188	34	12	23	29	1.91
473364--473483	42	2.8	43	79	2	143	39	12	24	24	1.89
480071--480106	15	2.5	15	95	4	65	19	13	11	55	1.68
481740--481845	37	2.9	36	83	8	124	16	18	29	34	1.94
487422--487484	22	2.9	22	86	9	67	33	17	15	33	1.92
493103--493656	219	2.5	219	81	4	548	35	10	13	40	1.79
494366--494404	20	2.0	20	95	5	71	41	0	20	38	1.53
496438--497203	39	19.4	39	86	3	996	23	18	30	28	1.98
507328--507877	39	13.8	39	81	5	582	30	28	17	23	1.97
509384--509466	26	3.2	26	72	13	89	27	9	0	62	1.26
509371--509459	15	6.6	14	70	23	59	28	7	0	64	1.21
510541--511090	39	13.8	39	81	5	582	30	28	17	23	1.97
512597--512679	26	3.2	26	72	13	89	27	9	0	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512584--512672	15	6.6	14	70	23	59	28	7	0	64	1.21
512879--513450	219	2.6	219	84	4	692	34	11	13	40	1.80
513569--513600	15	2.2	15	94	5	57	62	0	0	37	0.95
513757--513845	36	2.4	36	84	1	106	32	30	16	20	1.95
513779--513847	36	1.9	36	93	0	120	31	27	17	23	1.97
513882--513963	38	2.2	38	84	6	114	28	24	15	31	1.96
518632--518847	37	5.8	37	82	3	256	34	31	18	15	1.93
518628--518847	111	2.0	110	84	5	291	34	31	19	15	1.93
524705--524785	34	2.4	34	95	0	144	46	14	19	18	1.83
524707--524762	17	3.3	17	69	0	58	44	12	21	21	1.85
524714--524770	17	3.4	17	70	0	60	43	14	22	19	1.86
524705--524804	34	2.9	34	88	2	112	47	13	20	20	1.82
525301--525352	21	2.5	21	93	0	86	23	34	15	26	1.94
534154--534633	238	2.0	237	89	3	723	40	14	7	38	1.74
535613--536182	148	3.8	145	77	11	557	44	9	2	43	1.50
535995--536052	21	2.7	21	79	15	66	53	10	0	36	1.35
535650--536301	148	4.5	147	79	10	533	44	9	2	42	1.51
536055--536316	139	1.9	140	80	5	309	43	9	3	43	1.54
536723--536751	3	9.7	3	100	0	58	65	0	0	34	0.93
542693--542908	41	5.2	41	84	5	249	42	10	22	25	1.85
543548--543596	21	2.3	21	92	0	80	22	10	30	36	1.87
557640--557686	21	2.2	21	81	7	60	10	31	2	55	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557807--557854	16	2.8	18	79	20	59	4	20	2	72	1.11
557807--557857	17	2.9	19	80	16	65	3	23	1	70	1.14
569045--569094	21	2.4	21	86	0	64	26	14	26	34	1.94
576225--576277	21	2.5	21	75	6	54	35	26	13	24	1.92
576987--577117	51	2.5	51	83	1	163	37	22	12	26	1.91
576994--577156	25	6.4	25	78	4	130	35	24	14	25	1.93
583875--584061	25	7.4	25	77	1	140	34	23	15	26	1.95
583896--584064	25	6.7	25	75	4	142	34	23	15	26	1.94
583892--584064	77	2.3	75	80	2	202	34	23	15	26	1.94
588006--588044	18	2.2	18	90	0	60	33	0	20	46	1.51
589229--589281	24	2.3	23	90	3	79	28	26	22	22	1.99
591312--591348	15	2.5	15	95	0	65	10	13	2	72	1.21
602087--602228	48	2.9	48	90	1	212	54	15	9	20	1.68
607569--607756	19	10.2	19	74	11	158	26	28	19	25	1.99
607596--607752	36	4.3	36	83	4	181	28	28	19	23	1.98
607568--607752	18	10.1	18	75	9	151	27	27	19	25	1.99
611425--611466	2	21.0	2	95	0	75	52	0	0	47	1.00

Tables:   1   2

The End!