genome.fa.s11399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011399.1 Kokia drynarioides strain JFW-HI SEQ_126381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  481736

Tables:   1   2   

This is table  1  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1890--2267	207	1.8	207	88	1	587	35	13	13	36	1.84
13892--13929	18	2.2	18	85	4	51	31	0	0	68	0.90
14265--14321	25	2.3	25	75	24	59	52	5	5	36	1.47
17047--17105	29	2.0	29	93	0	100	30	13	16	38	1.88
17924--17957	17	1.9	18	94	5	61	29	2	26	41	1.70
19980--20004	9	2.8	9	100	0	50	44	0	24	32	1.54
21668--21703	2	18.0	2	100	0	72	50	50	0	0	1.00
21827--21888	29	2.0	32	85	14	87	51	12	0	35	1.40
22992--23092	28	3.6	28	67	18	75	40	16	8	33	1.80
23044--23142	29	3.3	29	80	7	101	32	17	7	43	1.76
25948--26249	151	2.0	151	94	0	523	43	11	10	34	1.76
30559--30627	28	2.4	27	79	13	77	52	27	1	18	1.54
30558--30627	27	2.5	28	79	11	81	51	28	1	18	1.55
45225--45275	24	2.1	24	88	0	75	23	11	9	54	1.66
45655--45716	28	2.2	28	94	2	106	46	19	8	25	1.77
53541--53570	14	2.1	14	100	0	60	20	6	6	66	1.38
63190--63249	17	3.5	17	82	11	77	21	15	10	53	1.70
63172--63250	34	2.3	35	84	2	97	22	17	10	49	1.77
63191--63270	34	2.4	33	83	8	90	22	13	15	48	1.79
63781--63831	24	2.1	24	96	0	93	39	0	17	43	1.49
65648--65917	42	6.4	42	90	0	396	33	10	26	28	1.90
66447--66529	37	2.2	37	79	8	89	31	18	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66546--66599	26	2.1	26	82	0	63	29	18	22	29	1.97
69695--69759	17	3.9	17	75	4	60	18	21	12	47	1.81
70892--70974	37	2.2	37	93	0	139	32	33	13	20	1.91
81432--81627	42	4.6	42	83	3	259	32	10	27	29	1.90
85738--85781	18	2.4	18	84	3	61	52	13	11	22	1.72
87433--87472	21	1.9	21	89	0	62	55	0	0	45	0.99
87723--87779	19	3.0	19	82	12	64	26	1	0	71	0.95
88093--88133	21	2.0	21	85	9	57	80	2	7	9	0.99
88550--88601	29	2.0	27	82	17	65	34	0	11	53	1.37
88562--88618	29	1.9	30	82	3	71	35	3	14	47	1.61
89699--89748	24	2.1	24	100	0	100	28	8	12	52	1.66
94663--94693	2	15.5	2	100	0	62	48	0	0	51	1.00
95055--95083	12	2.3	13	88	11	51	37	6	0	55	1.27
96660--96702	21	2.0	22	90	4	70	48	0	0	51	1.00
96663--96736	30	2.4	31	93	2	123	52	0	1	45	1.09
98996--99039	22	2.0	22	91	4	72	29	20	2	47	1.62
105244--105320	39	2.0	39	86	0	109	38	18	16	25	1.92
105256--105476	39	5.7	39	68	4	115	37	18	18	26	1.93
105246--105478	78	3.0	78	74	6	229	37	18	17	26	1.93
107333--107366	16	2.1	16	88	5	50	61	11	2	23	1.43
107626--107988	136	2.7	133	84	8	441	35	10	10	44	1.73
108027--108085	29	2.0	30	90	3	93	30	1	13	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115286--115329	18	2.4	18	88	0	61	36	22	15	25	1.94
122497--122548	2	26.0	2	88	0	77	44	0	5	50	1.26
125729--125854	24	5.2	24	94	0	198	26	23	23	26	2.00
129697--129742	19	2.5	19	77	16	53	58	4	2	34	1.30
130739--130771	16	2.0	17	88	5	50	72	0	0	27	0.85
131437--131473	19	1.9	19	88	0	56	51	5	8	35	1.55
131487--131525	20	2.0	20	84	0	51	33	5	10	51	1.58
131760--131816	15	3.5	15	71	17	51	49	1	0	49	1.11
135272--135625	29	12.1	28	72	12	191	38	2	25	34	1.70
135160--135313	58	2.6	58	76	9	143	33	5	28	32	1.79
135271--135645	30	12.8	30	73	10	242	37	2	25	34	1.70
135285--135624	57	5.9	57	77	8	267	38	2	24	34	1.69
136687--136752	21	3.0	22	76	18	66	39	0	4	56	1.20
137409--137467	18	3.4	17	79	11	66	59	1	0	38	1.08
137420--137483	29	2.2	29	85	0	83	57	6	0	35	1.24
137905--138284	49	7.7	50	78	9	386	16	24	18	40	1.91
137904--138293	99	4.0	99	89	2	556	16	24	18	39	1.91
149918--150101	29	6.3	29	71	15	119	32	5	27	35	1.80
149966--150468	29	17.1	30	70	9	268	38	3	23	33	1.74
149966--150128	59	2.8	59	81	0	209	34	3	25	36	1.74
150110--150428	59	5.5	59	81	4	344	39	3	23	33	1.73
151494--151554	3	20.3	3	76	6	61	34	3	1	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152228--152301	18	4.4	19	75	22	60	56	4	0	39	1.18
152245--152301	6	9.7	6	80	3	71	57	1	0	40	1.09
152228--152326	29	3.3	29	83	5	110	54	6	0	39	1.25
152233--152302	12	5.8	12	81	5	61	60	2	0	37	1.12
152259--152317	17	3.8	16	76	21	63	57	6	0	35	1.25
152953--152986	9	3.9	9	92	7	61	76	0	0	23	0.79
152953--152986	17	1.9	18	94	5	61	76	0	0	23	0.79
154258--154401	30	4.9	29	76	9	105	38	20	4	35	1.74
154277--154401	30	4.2	30	76	8	121	41	20	4	32	1.74
154277--154401	59	2.1	60	78	1	135	41	20	4	32	1.74
154376--154431	29	1.9	29	85	0	76	33	19	8	37	1.83
154563--154603	20	2.0	20	86	9	57	19	0	7	73	1.07
167960--168096	60	2.3	59	83	5	177	40	19	4	35	1.72
167921--168100	29	6.0	29	78	6	164	40	21	3	34	1.72
169184--169252	23	3.0	23	74	4	86	57	8	27	5	1.51
171791--171815	12	2.1	12	100	0	50	24	16	8	52	1.70
174404--174440	16	2.1	19	85	14	53	51	10	0	37	1.37
174401--174443	17	2.4	18	82	17	54	51	9	0	39	1.34
177517--177560	23	2.0	23	90	4	72	25	0	6	68	1.14
177631--177684	16	3.4	16	78	0	63	44	1	20	33	1.62
178250--178308	30	2.0	30	86	0	82	49	18	1	30	1.58
179553--179618	33	2.0	33	96	0	123	30	16	21	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180353--180377	3	8.3	3	100	0	50	32	0	0	68	0.90
187055--187091	19	1.9	19	100	0	74	16	16	13	54	1.72
189023--189123	6	17.3	6	73	13	77	40	0	0	57	1.12
189023--189119	17	5.9	17	76	9	94	40	1	1	57	1.12
189040--189132	23	4.0	23	84	2	114	41	1	3	53	1.24
189026--189114	41	2.2	41	84	8	110	42	1	1	55	1.14
190018--190060	19	2.2	20	83	4	52	67	9	9	13	1.42
190771--191149	30	12.8	30	73	12	193	35	26	4	33	1.76
190923--191149	58	3.9	58	80	9	212	35	27	4	32	1.78
200539--201113	210	2.7	207	87	2	783	35	18	22	23	1.95
200917--201285	172	2.1	172	89	1	560	37	17	22	23	1.94
200707--201493	381	2.1	382	89	0	1209	37	18	21	21	1.95
201096--201498	209	1.9	209	90	1	646	37	19	21	21	1.94
201874--201923	17	2.9	17	88	5	75	42	0	2	56	1.11
201891--201949	24	2.5	24	88	2	84	44	1	1	52	1.21
201877--201951	6	12.7	6	70	17	50	44	1	1	53	1.17
201900--201951	11	4.5	11	74	11	50	42	1	1	53	1.23
201877--201960	41	2.0	41	86	0	114	44	1	3	51	1.26
202862--202900	20	1.9	21	89	5	62	66	10	10	12	1.44
203654--203721	30	2.3	29	94	5	118	33	26	5	33	1.81
203697--203770	28	2.6	27	78	16	69	39	25	5	29	1.78
203697--203781	30	2.9	29	77	19	81	37	27	5	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203726--203887	29	5.6	29	75	12	134	32	26	6	35	1.81
203811--204036	29	7.8	28	76	9	120	30	29	8	31	1.88
203726--204036	87	3.6	88	79	8	300	30	28	8	32	1.87
203823--204036	58	3.7	59	76	8	199	29	29	8	31	1.88
203823--204062	87	2.7	86	78	6	259	29	29	10	31	1.89
207076--207152	7	11.0	7	75	10	50	33	2	32	31	1.72
207077--207128	21	2.5	21	81	6	61	36	3	30	28	1.75
210140--210559	160	2.6	158	80	3	466	33	13	15	37	1.87
212188--212278	24	3.7	24	78	8	92	21	51	1	25	1.55
216197--216328	42	3.2	42	81	4	133	31	21	10	36	1.87

Tables:   1   2