genome.fa.s11399.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011399.1 Kokia drynarioides strain JFW-HI SEQ_126381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  481736

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216181--216328	43	3.5	42	78	4	156	31	20	10	37	1.87
216309--216368	23	2.6	23	94	0	102	35	23	5	36	1.77
216534--216576	21	2.0	21	86	0	59	37	13	6	41	1.72
233954--234193	88	2.7	89	83	5	263	38	18	7	35	1.79
234018--234201	91	2.1	88	85	5	244	40	19	6	33	1.77
234204--234281	41	1.9	41	92	2	131	30	1	2	65	1.14
235412--235447	18	2.1	18	89	5	56	69	2	2	25	1.15
239177--239226	23	2.1	23	82	10	57	60	12	0	28	1.32
239625--239667	18	2.4	18	85	14	54	58	2	2	37	1.24
242475--242532	29	2.1	27	81	12	64	62	12	3	22	1.45
244084--244108	13	1.9	13	100	0	50	48	8	8	36	1.62
249225--249278	21	2.6	21	80	11	65	37	27	9	25	1.87
257456--257483	14	2.0	14	100	0	56	57	7	7	28	1.52
260129--260299	23	7.3	24	76	4	66	33	22	16	26	1.95
260191--260297	46	2.3	46	85	0	133	33	22	17	26	1.96
267565--267601	19	2.0	18	89	5	56	59	2	0	37	1.12
274204--274334	65	2.0	65	96	0	244	42	15	16	25	1.87
275165--275226	26	2.4	26	86	0	88	46	22	22	8	1.78
275211--275278	23	3.0	22	79	8	75	38	25	23	13	1.91
279118--279188	29	2.4	29	86	4	108	40	23	14	21	1.89
290387--290431	17	2.6	17	82	0	54	17	20	15	46	1.84
293585--293641	24	2.4	24	88	8	82	33	19	14	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298285--298334	21	2.4	21	86	6	66	36	20	12	32	1.89
311075--311113	17	2.3	17	86	0	51	23	17	7	51	1.71
320153--320213	30	2.0	30	83	3	77	54	4	3	37	1.39
320775--320815	21	2.0	21	95	0	73	60	4	29	4	1.38
320776--320824	21	2.3	21	89	0	71	61	6	26	6	1.43
321194--321284	46	2.0	46	86	4	130	24	7	16	51	1.70
328031--328079	20	2.5	20	86	3	64	34	4	10	51	1.55
328172--328215	22	1.9	24	86	9	65	43	6	0	50	1.29
329010--329059	26	1.9	26	83	0	64	22	0	22	56	1.43
351082--351120	20	1.9	21	84	5	53	58	0	5	35	1.20
354065--354246	87	2.1	87	89	2	276	45	19	10	24	1.82
354078--354270	87	2.2	87	84	3	228	45	18	11	24	1.82
361060--361098	17	2.3	17	90	0	60	15	15	23	46	1.83
363367--363520	78	2.0	78	87	2	220	53	13	3	29	1.56
363633--363691	20	3.2	19	74	18	61	57	6	3	32	1.41
363446--363706	96	2.7	95	87	6	355	55	11	3	30	1.50
363484--363708	49	4.7	49	75	10	160	55	11	3	30	1.50
363640--363777	72	1.9	72	86	7	201	56	12	2	28	1.48
364298--364339	20	2.0	20	86	4	57	71	0	4	23	1.05
364519--364579	26	2.5	23	73	19	61	68	3	3	24	1.19
365115--365242	60	2.1	62	88	5	192	45	2	1	50	1.23
369441--369469	14	2.1	14	93	6	51	72	6	3	17	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370023--370068	12	3.7	13	78	18	53	60	0	0	39	0.97
371381--371424	22	2.0	23	86	4	63	59	4	4	31	1.38
371776--371842	35	1.9	35	87	6	100	14	23	19	41	1.89
375158--375195	18	2.2	17	86	9	51	0	21	7	71	1.11
376279--376377	50	2.0	50	95	0	180	41	22	5	31	1.75
377745--377987	92	2.6	92	80	6	240	32	21	18	27	1.96
380837--380863	2	13.5	2	100	0	54	48	0	0	51	1.00
382239--382300	31	2.0	31	96	0	115	33	9	27	29	1.88
383149--383396	94	2.6	94	87	1	354	31	22	17	27	1.97
390241--390272	16	2.0	16	93	0	55	40	25	12	21	1.88
390530--390564	18	1.9	18	94	0	61	40	11	14	34	1.82
391822--392280	23	20.0	23	86	0	603	47	13	4	33	1.64
392683--392933	36	7.0	36	82	2	290	37	21	10	30	1.87
398530--398568	14	2.8	14	88	7	53	30	0	5	64	1.15
398989--399037	23	2.2	23	89	7	75	38	0	0	61	0.96
404901--404929	14	2.1	14	100	0	58	48	13	20	17	1.81
410263--410344	41	2.0	41	95	0	146	52	8	10	28	1.66
410332--410371	19	2.0	20	85	4	55	42	0	2	55	1.13
411196--411258	29	2.2	29	100	0	126	34	6	28	30	1.82
429850--429874	6	4.2	6	100	0	50	16	36	16	32	1.90
431243--431301	18	3.3	18	90	0	82	11	30	10	47	1.73
431254--431309	18	2.8	21	81	15	82	12	26	8	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437001--437472	154	3.0	154	87	3	678	22	16	18	41	1.89
448396--448582	99	1.9	99	93	0	320	41	8	19	31	1.81
449139--449305	87	1.9	85	90	2	262	36	18	15	29	1.92
461755--461802	16	3.1	16	75	6	53	72	0	18	8	1.08
466648--466695	16	3.1	16	75	6	53	72	0	18	8	1.08
466976--467855	437	2.0	437	95	0	1566	30	17	18	34	1.93
469141--469306	78	2.1	78	78	4	183	27	17	19	34	1.95
476980--477022	19	2.3	19	84	8	52	58	4	0	37	1.19
478486--478543	12	4.7	11	80	16	53	79	0	3	17	0.87
478487--478543	18	3.1	17	79	16	69	78	0	3	17	0.88
481287--481316	15	1.9	16	93	6	53	70	0	13	16	1.18

Tables:   1   2

The End!