genome.fa.s11426.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011426.1 Kokia drynarioides strain JFW-HI SEQ_126410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  550552

Tables:   1   2   

This is table  2  of  2  ( 183 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380064--380104	21	1.9	22	90	5	66	58	4	0	36	1.20
381508--381594	11	7.9	11	73	13	63	41	1	1	56	1.14
381513--381588	17	4.5	17	80	1	91	39	1	1	57	1.15
381508--381560	5	10.0	5	76	11	52	37	0	1	60	1.08
381523--381592	11	6.2	12	75	11	67	40	1	1	57	1.17
381604--381641	18	2.2	17	86	9	51	42	26	7	23	1.81
383363--383724	30	12.4	29	75	13	196	32	27	4	36	1.76
383364--383665	58	5.2	58	78	13	241	32	26	3	37	1.75
393018--393051	3	11.3	3	100	0	68	67	0	0	32	0.91
393822--393858	17	2.3	16	86	13	58	75	5	8	10	1.17
395625--395663	17	2.2	18	86	4	53	46	0	0	53	1.00
413743--414086	123	3.0	109	74	12	321	14	10	47	24	1.75
413897--414028	48	2.7	48	72	3	129	17	8	48	25	1.75
414020--414052	12	2.8	12	90	9	50	0	18	48	33	1.48
414021--414163	60	2.4	61	84	6	177	10	13	49	26	1.74
415255--415297	16	2.8	16	82	10	54	48	6	2	41	1.43
425142--425263	62	2.0	62	91	0	199	36	16	14	31	1.89
426227--426277	25	2.0	27	84	7	70	25	1	9	62	1.36
432792--432823	6	5.3	6	100	0	64	15	34	0	50	1.45
434474--434511	14	2.8	13	92	4	58	36	0	0	63	0.95
435150--435206	15	3.9	15	79	4	53	52	0	17	29	1.45
440807--440831	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447179--447203	13	1.9	13	100	0	50	0	0	8	92	0.40
447254--447337	44	1.9	44	100	0	168	38	11	21	28	1.89
454273--454341	28	2.4	28	78	9	68	33	0	2	63	1.09
460977--461020	18	2.5	17	82	10	52	59	0	2	38	1.10
461679--461711	17	1.9	18	88	11	52	57	0	0	42	0.98
462266--462304	19	2.0	20	85	5	53	30	20	12	35	1.90
463387--463440	22	2.3	24	78	12	60	44	0	1	53	1.11
464048--464123	14	5.4	14	73	9	57	73	6	2	17	1.16
465852--465910	27	2.1	28	81	9	68	13	42	5	38	1.66
479682--479883	99	2.0	100	88	0	298	21	13	14	50	1.77
486980--487090	58	1.9	57	83	9	143	56	13	10	18	1.66
492757--492830	30	2.5	30	76	6	78	54	8	1	36	1.39
493868--493911	23	2.0	22	90	4	70	38	9	11	40	1.73
496392--496503	36	3.1	36	97	0	206	60	8	11	18	1.56
497229--497286	29	2.0	29	83	6	73	70	0	1	27	0.97
497237--497262	5	5.2	5	100	0	52	80	0	0	19	0.71
497380--497452	37	1.9	39	88	5	114	35	19	12	32	1.89
497418--497800	61	6.4	59	77	8	258	28	19	15	37	1.91
497425--497813	121	3.2	119	75	11	308	29	18	14	37	1.91
498621--498675	17	3.5	16	71	19	53	60	3	10	25	1.47
498621--498711	30	3.0	30	86	0	119	61	4	7	26	1.42
498636--498730	30	3.1	30	85	8	113	63	4	6	26	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499787--499839	22	2.4	22	64	0	52	49	3	9	37	1.53
499867--499914	21	2.3	20	78	7	51	70	2	4	22	1.15
499867--499923	30	1.9	30	82	13	73	70	3	3	22	1.18
501091--501634	83	6.5	84	86	5	717	47	4	5	42	1.46
501218--501445	45	5.4	43	62	23	108	48	4	6	41	1.48
501129--501337	38	5.1	38	64	23	104	48	4	5	41	1.47
504612--505087	61	7.9	59	74	8	299	40	14	15	28	1.87
504639--504998	181	2.0	181	79	8	392	41	13	16	28	1.85
507374--507416	21	2.0	22	81	4	52	16	44	0	39	1.48
508039--508205	83	2.0	83	100	0	334	41	13	22	22	1.88
518041--518218	36	4.9	36	86	4	218	14	21	40	23	1.90
524435--524482	24	2.0	24	100	0	96	45	4	20	29	1.70
526801--526884	39	2.2	39	93	0	141	35	10	20	33	1.87
526839--526938	51	2.0	51	97	0	191	34	7	23	36	1.82
527683--527878	97	2.0	97	98	0	383	26	12	15	45	1.81
539336--539434	46	2.2	46	83	0	135	36	22	11	30	1.89
548454--548507	17	3.2	17	82	12	58	61	1	0	37	1.07
548455--548507	26	2.0	26	85	7	72	62	1	0	35	1.06
548460--548507	9	5.3	9	85	7	53	60	2	0	37	1.09

Tables:   1   2

The End!