genome.fa.s11426.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011426.1 Kokia drynarioides strain JFW-HI SEQ_126410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  550552

Tables:   1   2   

This is table  1  of  2  ( 183 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520--569	14	3.6	13	81	10	55	48	28	8	16	1.74
704--751	22	2.1	23	88	3	71	22	58	10	8	1.58
1117--1199	3	27.7	3	100	0	166	67	0	0	32	0.91
2229--2579	30	12.0	29	75	15	230	35	25	3	35	1.74
2269--2548	59	4.8	61	83	6	348	35	24	3	35	1.74
2229--2552	118	2.7	119	85	5	401	34	25	4	35	1.75
2478--2603	29	4.4	28	75	17	91	35	23	3	38	1.71
2533--2603	28	2.5	28	86	4	90	39	22	0	38	1.54
4917--4952	18	2.1	17	89	5	54	5	11	11	72	1.28
17047--17079	1	33.0	1	100	0	66	0	0	0	100	0.00
19362--19394	17	1.9	17	93	0	57	0	21	0	78	0.75
22762--22802	19	2.2	19	95	0	73	43	12	4	39	1.63
34464--34503	21	1.9	21	89	0	62	32	12	5	50	1.62
35801--35832	7	4.9	7	85	14	50	0	9	0	90	0.45
35801--35831	12	2.5	12	94	5	53	0	9	0	90	0.46
35801--35840	19	2.1	19	90	4	62	0	10	5	85	0.75
36869--36922	26	2.0	27	82	7	65	55	11	9	24	1.64
38579--38642	24	2.7	24	87	0	92	70	17	4	7	1.29
38579--38642	12	5.3	12	80	0	74	70	17	4	7	1.29
38673--38760	43	2.0	43	84	4	113	70	12	5	11	1.32
42085--42135	25	2.0	25	81	7	59	17	21	11	49	1.79
44221--44250	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44784--44860	32	2.4	32	78	8	93	48	10	14	27	1.76
44954--44984	5	6.2	5	92	0	53	41	0	0	58	0.98
50436--50504	22	2.9	25	75	14	74	56	2	0	40	1.14
50436--50484	24	2.0	25	88	4	73	61	2	0	36	1.08
57068--57092	2	12.5	2	100	0	50	48	0	0	52	1.00
57481--57528	23	2.0	23	84	8	60	47	2	4	45	1.33
61826--61855	6	5.0	6	95	0	51	33	3	63	0	1.11
67410--67446	11	3.4	11	84	0	56	51	0	40	8	1.32
82278--82340	21	3.0	21	80	0	81	23	17	23	34	1.96
82328--82365	20	1.9	20	94	0	67	13	15	23	47	1.81
87165--88088	464	2.0	464	97	0	1735	30	18	25	25	1.98
98762--98814	23	2.3	23	86	0	70	37	7	0	54	1.29
102293--102339	23	2.0	23	100	0	94	51	8	4	36	1.52
117763--117825	33	1.9	33	96	0	117	22	19	12	46	1.83
118431--118462	2	16.0	2	93	0	55	50	3	0	46	1.17
129446--129500	19	2.8	19	81	10	60	36	14	3	45	1.63
130622--130673	18	3.0	18	81	10	56	46	1	0	51	1.12
130779--130816	20	1.9	20	89	10	60	55	15	10	18	1.68
137359--137399	20	2.0	22	85	9	59	68	12	9	9	1.40
146822--146860	14	2.7	15	80	8	53	56	10	7	25	1.59
147239--147284	24	1.9	23	86	8	65	56	6	4	32	1.45
147233--147374	61	2.3	61	97	0	266	49	13	6	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147300--147345	24	1.9	23	86	8	65	56	6	4	32	1.45
149959--150044	42	2.0	42	88	4	129	20	13	23	41	1.88
162471--162552	6	14.3	6	69	19	59	46	1	1	51	1.16
162471--162549	33	2.3	34	85	8	108	45	1	1	51	1.17
162516--162562	24	2.0	23	91	4	76	48	2	0	48	1.13
162471--162549	17	4.6	17	83	12	92	45	1	1	51	1.17
164351--164582	29	8.0	28	79	9	184	35	26	2	35	1.69
164365--164529	58	2.8	59	86	5	212	34	29	3	33	1.73
164374--164529	59	2.7	60	87	5	205	33	30	3	33	1.74
164706--164823	30	4.0	29	78	11	107	33	31	4	31	1.77
164810--164895	29	3.0	28	88	8	120	38	18	0	43	1.51
187200--187242	18	2.4	18	88	7	61	46	0	0	53	1.00
201585--201643	30	1.9	32	89	6	95	52	10	0	37	1.35
205760--205822	30	2.1	31	85	8	85	49	4	1	44	1.33
208317--208351	3	11.7	3	100	0	70	0	34	0	65	0.93
208837--208915	41	1.9	41	87	5	115	44	5	15	35	1.68
209704--209796	22	4.2	23	75	9	77	52	1	0	46	1.07
209650--209791	74	1.9	75	82	7	182	52	2	0	45	1.15
209736--209794	22	2.6	22	89	2	82	52	1	0	45	1.10
214528--214564	2	19.0	2	94	5	67	48	0	0	51	1.00
214597--214621	5	5.0	5	100	0	50	80	20	0	0	0.72
218514--218560	20	2.3	21	79	17	55	17	0	34	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221253--221303	16	3.2	16	73	13	52	50	1	0	47	1.12
221360--221395	15	2.3	16	90	4	56	61	0	2	36	1.11
233796--233920	55	2.2	56	81	4	146	22	21	31	24	1.98
234948--234987	5	8.0	5	83	10	55	20	2	0	77	0.88
236055--236297	39	6.2	39	82	0	252	40	18	15	26	1.90
236055--236297	117	2.1	117	82	0	297	40	18	15	26	1.90
236058--236355	78	3.8	77	79	2	274	40	18	16	25	1.90
236146--236356	117	1.8	117	81	4	264	41	18	15	24	1.89
236055--236362	39	7.9	39	79	5	211	39	18	15	25	1.90
237889--237988	50	2.0	50	86	3	139	37	12	16	35	1.85
239537--239569	12	2.6	13	85	9	50	48	6	0	45	1.27
240961--241004	22	2.0	21	83	12	54	25	4	9	61	1.45
246523--246569	20	2.2	22	81	11	62	36	2	0	61	1.08
246530--246570	20	2.0	21	90	4	66	41	0	0	58	0.98
253580--253616	18	2.1	18	94	0	65	10	29	16	43	1.82
257147--257182	17	2.1	17	94	0	63	80	0	19	0	0.71
257147--257182	4	8.8	4	87	6	54	80	0	19	0	0.71
257377--257421	23	2.0	23	82	8	56	28	0	6	64	1.19
257944--257989	14	3.1	15	71	22	51	60	8	0	30	1.26
257942--257991	16	3.2	16	73	21	61	60	8	0	32	1.26
258034--258077	22	2.0	22	90	0	70	25	9	9	56	1.59
260227--260293	35	1.9	35	87	0	98	52	19	0	28	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260263--260316	21	2.6	21	81	0	63	51	22	0	25	1.48
262762--262808	24	2.0	24	100	0	94	17	17	21	44	1.86
262800--262837	18	2.1	18	100	0	76	28	15	5	50	1.66
263213--263269	27	2.1	28	87	9	82	59	8	1	29	1.38
263272--263346	4	19.5	4	81	13	79	0	28	0	72	0.86
264966--265054	31	2.9	31	77	0	97	35	6	12	44	1.68
266654--266754	49	2.1	49	100	0	202	29	20	5	43	1.76
267525--267561	16	2.4	16	86	13	51	70	0	0	29	0.88
267527--267567	16	2.7	15	79	20	50	70	0	0	29	0.87
281793--281828	17	2.1	18	94	5	65	52	8	0	38	1.32
281783--281872	47	2.0	46	84	6	121	47	5	5	41	1.50
309802--309832	7	4.4	7	95	0	53	83	0	3	12	0.75
320720--320750	14	2.2	14	94	0	53	41	3	0	54	1.16
328746--328788	16	2.7	16	82	10	52	67	0	2	30	1.03
328948--329468	258	2.0	259	92	1	875	38	10	13	37	1.80
347743--347774	16	2.0	17	88	11	50	53	9	0	37	1.34
350807--350868	29	2.2	28	86	11	90	61	1	0	37	1.06
351288--351357	31	2.3	31	94	0	122	31	4	15	48	1.65
351422--351455	17	1.9	18	94	5	61	73	0	5	20	1.04
351541--351574	5	6.8	5	100	0	68	20	0	0	79	0.73
356334--356369	19	1.9	19	88	5	56	52	2	0	44	1.15
356483--356546	25	2.7	25	81	11	64	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361595--361671	29	2.5	31	89	6	113	59	3	2	33	1.29
361770--361807	17	2.2	17	90	0	58	50	0	0	50	1.00
362618--362715	52	1.9	52	84	10	132	59	2	3	35	1.25
362642--362715	13	5.8	13	81	7	80	59	1	4	35	1.25
363793--364195	29	13.7	29	79	12	389	35	29	3	32	1.74
363793--364155	87	4.1	88	82	9	429	35	28	3	32	1.74
365182--365238	3	19.3	3	73	22	50	66	0	3	29	1.08
365182--365238	15	4.3	13	78	21	57	66	0	3	29	1.08
372739--372790	27	2.0	26	85	11	70	44	9	7	38	1.66
377208--377234	3	9.0	3	100	0	54	33	66	0	0	0.92

Tables:   1   2