genome.fa.s11479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011479.1 Kokia drynarioides strain JFW-HI SEQ_126463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80075

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1540--1615	35	2.2	35	85	2	109	42	3	35	18	1.69
1544--1603	17	3.5	17	70	20	52	38	3	38	20	1.69
1920--1965	20	2.2	21	88	3	67	47	0	0	52	1.00
2127--2161	15	2.2	16	90	5	54	42	2	0	54	1.15
10755--10780	13	2.0	13	100	0	52	84	0	15	0	0.62
15984--16030	20	2.3	20	100	0	94	14	23	36	25	1.93
18733--18770	20	2.0	19	90	10	60	47	10	0	42	1.38
26241--26580	52	6.6	52	87	0	421	24	15	25	35	1.94
26420--26500	26	3.2	25	65	16	58	24	11	27	37	1.89
37074--37124	23	2.2	24	82	10	61	39	0	3	56	1.18
39233--39341	41	2.7	41	94	0	182	30	6	25	37	1.81
41181--41261	24	3.4	24	89	0	117	25	13	9	50	1.72
44329--44355	13	2.1	13	100	0	54	37	22	7	33	1.82
51334--51380	25	2.0	24	83	8	60	34	6	0	59	1.23
51537--51567	10	3.1	10	90	0	53	22	0	0	77	0.77
51527--51567	20	2.0	20	86	9	57	26	0	2	70	0.99
52153--52204	18	2.8	18	77	11	52	75	3	1	19	1.06
52975--53012	17	2.2	17	86	9	51	68	2	0	28	1.03
53362--53392	14	2.2	14	94	0	53	35	3	3	58	1.31
54144--54202	29	2.0	30	86	3	84	52	15	3	28	1.58
64927--64968	19	2.2	19	86	0	57	59	7	9	23	1.53
70318--70473	67	2.3	66	83	6	190	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70377--70698	172	1.9	171	84	5	434	31	18	17	32	1.94
70499--70630	67	2.0	67	80	8	153	28	19	17	34	1.95
78512--78563	21	2.5	21	83	0	68	32	25	17	25	1.97

Tables:   1

The End!