genome.fa.s11484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011484.1 Kokia drynarioides strain JFW-HI SEQ_126468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  432696

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7127--7198	35	2.1	35	100	0	144	37	2	19	40	1.66
11792--11849	20	2.9	21	76	10	66	50	10	10	29	1.70
19448--19493	20	2.3	20	82	14	51	54	0	8	36	1.32
22050--22091	17	2.4	18	78	21	54	50	19	14	16	1.79
22231--22271	21	2.0	21	85	9	57	2	31	9	56	1.45
23997--24036	20	2.0	20	90	0	62	2	22	12	62	1.42
23995--24043	20	2.3	22	75	17	57	2	18	20	59	1.48
48843--48949	53	2.0	53	100	0	214	29	25	11	33	1.90
50393--50437	22	2.0	22	100	0	90	22	4	8	64	1.40
53299--53348	26	1.9	26	84	8	66	20	34	22	24	1.97
54050--54123	34	2.1	36	82	5	89	48	13	17	20	1.80
54140--54185	21	2.1	22	84	15	60	54	10	10	23	1.67
63285--63309	13	1.9	13	100	0	50	0	20	0	80	0.72
75374--75422	25	2.0	25	88	8	73	32	10	20	36	1.86
78397--78436	21	1.9	21	84	0	53	57	7	2	32	1.40
82528--82580	26	2.0	26	100	0	106	37	11	16	33	1.85
83315--83362	17	2.8	17	83	0	60	54	10	16	18	1.70
83313--83370	17	3.4	17	75	13	57	51	8	22	17	1.72
85940--86005	32	2.1	32	91	0	105	21	21	13	43	1.86
102491--102530	21	1.9	21	89	0	62	25	17	15	42	1.88
117182--117295	43	2.7	43	90	2	167	38	19	9	32	1.84
122914--123282	123	3.0	123	89	2	542	38	10	7	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123220--123431	106	2.0	108	89	3	331	42	8	7	41	1.65
128758--129108	118	2.9	122	85	5	496	39	8	8	43	1.66
129038--129258	106	2.1	107	87	3	320	42	6	7	44	1.57
146954--147099	34	4.3	35	76	13	137	39	8	24	26	1.85
146942--147098	68	2.3	66	81	6	174	40	8	25	26	1.83
154800--154842	18	2.4	18	84	7	61	48	0	2	48	1.14
154861--154925	27	2.4	27	82	7	87	36	10	7	44	1.68
159178--159240	31	2.0	31	100	0	126	55	19	0	25	1.43
164201--164246	21	2.2	21	84	3	58	17	39	23	19	1.92
167931--167961	14	2.1	15	94	5	55	12	0	9	77	0.99
168091--168674	40	14.4	40	85	2	650	26	14	23	34	1.94
168091--168674	162	3.6	159	83	3	630	26	14	23	34	1.94
168091--168667	202	2.8	202	86	2	782	26	15	23	35	1.94
170130--170173	20	2.2	20	84	8	54	20	13	15	50	1.78
174323--174384	27	2.2	28	83	8	74	50	6	12	30	1.66
188224--188275	14	3.3	15	79	15	52	3	21	0	75	0.97
188910--189033	20	6.2	20	75	0	122	40	19	18	21	1.92
188890--189016	40	3.2	40	78	0	119	40	19	19	20	1.92
188910--189033	60	2.1	60	84	3	160	40	19	18	21	1.92
191222--191279	3	19.0	3	89	3	89	62	0	3	34	1.12
195963--196175	107	2.0	109	86	5	299	33	13	14	38	1.85
202441--202478	19	2.0	19	100	0	76	42	15	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218001--218090	15	6.1	14	75	12	83	28	14	15	41	1.87
218000--218067	29	2.3	29	97	0	127	29	13	14	42	1.84
219485--219598	46	2.5	46	85	0	138	33	17	14	34	1.91
221502--221642	54	2.6	54	80	7	144	27	24	15	31	1.96
233502--233527	13	2.0	13	100	0	52	30	0	0	69	0.89
233927--233957	15	2.0	15	93	6	53	9	19	0	70	1.14
234561--234779	95	2.3	95	94	0	375	36	8	15	39	1.77
234952--234980	7	4.1	7	100	0	58	13	0	0	86	0.58
236615--236646	6	5.3	6	96	0	55	37	28	0	34	1.57
237302--237364	23	2.7	23	80	0	81	23	17	26	31	1.97
237348--237433	22	3.9	22	76	3	84	20	20	32	25	1.97
239102--239136	12	2.8	13	86	4	54	74	0	11	14	1.08
241925--241967	18	2.4	18	76	7	52	0	18	0	81	0.69
243016--243074	24	2.5	24	80	5	66	0	37	0	62	0.95
243014--243080	16	4.1	16	81	9	73	0	35	0	64	0.94
245901--245935	18	1.9	18	88	11	54	80	0	5	14	0.89
251244--251273	13	2.3	13	100	0	60	30	43	13	13	1.82
274924--275025	33	3.1	34	64	8	93	37	12	15	34	1.86
274895--275025	65	2.0	65	98	0	253	36	12	16	35	1.85
274895--274994	31	3.1	31	66	8	92	37	13	16	34	1.87
289007--289031	10	2.5	10	100	0	50	32	0	28	40	1.57
289362--289394	17	1.9	17	93	0	57	78	0	18	3	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305388--305445	29	2.0	29	96	0	107	18	10	18	51	1.74
344643--344825	100	1.8	99	92	3	314	30	11	15	42	1.82
344743--344887	58	2.5	59	84	6	188	28	14	16	40	1.88
345948--346087	69	2.0	69	87	2	201	25	23	22	28	1.99
348349--348404	22	2.4	23	82	11	62	66	7	0	26	1.18
355448--355480	3	11.3	3	93	6	59	69	0	0	30	0.88
355424--355485	9	7.1	8	77	18	54	64	3	0	32	1.09
356530--356591	20	3.1	20	86	4	81	46	17	17	17	1.84
356600--356629	16	1.9	15	93	6	51	6	6	36	50	1.55
363087--363165	28	2.7	29	84	3	97	35	16	5	43	1.70
363076--363157	28	2.9	28	76	8	85	34	17	4	43	1.70
369835--369892	18	3.2	18	76	9	55	44	13	10	31	1.78
374607--374733	62	2.0	62	95	0	227	34	23	14	26	1.94
383574--383929	123	2.9	123	90	0	550	39	11	8	40	1.72
383859--384081	107	2.1	107	88	6	335	41	8	7	42	1.65
396537--396582	19	2.4	19	96	0	83	41	4	26	28	1.74
416534--416566	17	1.9	17	93	0	57	57	6	18	18	1.60
421417--426546	906	5.7	906	93	0	8619	30	19	16	33	1.94
425954--427131	585	2.0	590	91	3	1897	29	19	15	34	1.93
426550--432696	881	6.9	903	90	2	9378	29	19	16	33	1.94

Tables:   1

The End!