genome.fa.s11505.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011505.1 Kokia drynarioides strain JFW-HI SEQ_126490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  365990

Tables:   1   2   

This is table  2  of  2  ( 165 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295088--295136	6	8.5	6	82	8	66	46	4	0	48	1.20
300207--300425	58	3.7	59	83	6	223	38	4	24	33	1.74
300236--300580	30	11.9	30	72	17	230	37	3	24	34	1.72
300237--300580	58	5.9	59	82	8	325	38	3	24	34	1.73
300272--300580	58	5.3	60	80	9	327	37	3	24	34	1.72
300257--300584	88	3.8	86	75	11	276	37	3	25	33	1.73
300272--300584	29	10.7	29	68	17	166	37	3	25	34	1.72
302416--302493	17	4.6	17	73	9	70	53	6	1	38	1.35
302829--303348	201	2.5	206	85	4	685	22	23	18	35	1.96
313623--313927	29	10.5	30	72	13	210	37	3	24	33	1.74
313623--313996	59	6.4	58	80	9	293	37	4	24	33	1.77
314729--314772	20	2.3	19	77	11	54	22	18	4	54	1.61
315838--315917	17	4.7	17	80	0	88	52	6	0	41	1.27
315983--316096	39	2.9	39	84	0	111	21	17	21	38	1.93
319151--319195	24	1.9	23	86	4	63	42	0	24	33	1.55
321870--321900	15	2.1	15	93	0	53	22	0	12	64	1.27
321919--321951	2	16.5	2	100	0	66	48	0	0	51	1.00
322012--322271	24	10.8	24	73	0	205	34	15	27	22	1.94
322000--322271	72	3.8	72	79	0	247	34	15	26	23	1.94
328275--328333	3	19.7	3	100	0	118	66	0	0	33	0.92
328678--328888	24	8.8	24	76	5	149	36	16	25	22	1.94
328678--328888	48	4.4	48	83	3	237	36	16	25	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331241--331423	52	3.5	52	93	0	314	25	15	23	35	1.94
334126--334177	26	2.0	26	96	0	95	25	15	11	48	1.78
349929--350010	6	14.3	6	70	14	66	53	1	2	42	1.21
349939--350010	17	4.2	17	85	1	99	54	1	2	41	1.23
349924--349961	12	3.2	12	77	7	51	63	0	0	36	0.95
349952--350027	23	3.3	23	70	18	68	53	1	3	40	1.27
350501--350727	39	5.8	38	74	10	138	24	16	31	27	1.96
350616--350824	77	2.7	78	83	4	244	25	14	31	28	1.95
350540--350862	78	4.2	78	78	5	298	25	16	31	26	1.96
351117--351874	49	15.4	50	75	7	209	18	27	16	36	1.93
351404--352157	48	15.4	48	75	4	434	17	27	17	36	1.93
351106--352157	99	10.7	98	69	7	309	18	27	17	36	1.93
351415--352157	196	3.8	194	80	3	774	18	27	17	36	1.93
351415--352155	392	1.9	390	82	3	916	18	27	17	36	1.93
351298--351929	244	2.6	243	80	1	728	18	27	18	36	1.94
351842--352171	146	2.3	147	81	3	380	17	28	17	36	1.93
351107--352170	440	2.4	438	75	6	1009	18	27	17	36	1.93
353033--353063	7	4.6	7	96	4	55	9	12	0	77	0.99
353017--353064	14	3.3	14	85	5	60	6	14	2	77	1.06
353054--353100	17	2.9	16	76	17	51	0	19	2	78	0.85
359103--359141	17	2.3	17	86	0	51	53	2	5	38	1.37
365822--365865	23	1.9	23	85	0	61	50	6	0	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365923--365952	14	2.2	14	94	5	53	46	0	0	53	1.00

Tables:   1   2

The End!