genome.fa.s11520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011520.1 Kokia drynarioides strain JFW-HI SEQ_126506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  653816

Tables:   1   2   

This is table  1  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172--206	4	8.8	4	87	0	52	25	28	0	45	1.54
8415--8467	10	5.5	10	78	13	58	81	1	11	5	0.94
8414--8463	18	2.6	19	81	15	59	82	2	10	6	0.92
8417--8461	21	2.2	20	84	4	54	84	2	8	4	0.84
8414--8469	19	2.8	20	77	22	57	80	1	12	5	0.96
8869--9553	42	16.5	42	86	1	941	20	18	24	36	1.95
9877--9907	11	2.9	11	95	4	55	0	16	0	83	0.64
9958--9984	3	9.0	3	100	0	54	33	0	0	66	0.92
10409--11374	151	6.4	148	89	4	1411	40	3	9	46	1.54
10518--11363	51	16.8	50	65	17	238	40	3	9	46	1.53
10409--11374	300	3.2	295	88	5	1400	40	3	9	46	1.54
12407--12890	241	2.0	239	89	1	736	36	7	14	41	1.73
13652--13721	23	3.0	23	79	8	88	35	7	17	40	1.77
19110--19148	18	2.2	18	86	9	53	61	2	17	17	1.46
30413--30452	6	6.8	6	91	5	55	10	32	0	57	1.32
34869--34893	4	6.2	4	100	0	50	76	0	24	0	0.80
34960--35031	29	2.5	29	86	4	101	45	6	1	45	1.38
45236--45310	29	2.6	29	82	2	87	36	8	18	37	1.80
45293--45381	40	2.2	40	89	0	133	48	5	23	22	1.72
48543--48581	16	2.5	15	88	12	60	30	38	0	30	1.58
49397--49430	17	2.0	17	94	0	59	17	14	17	50	1.79
51371--51439	24	2.9	24	86	0	102	37	20	13	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51374--51450	24	3.2	24	75	12	77	36	22	11	29	1.89
51585--51651	33	2.0	33	88	0	98	20	46	2	29	1.66
52646--52706	16	3.8	15	80	8	59	31	4	21	42	1.74
52646--52695	16	3.1	16	85	5	66	28	4	22	46	1.70
66445--66542	49	2.0	49	95	0	178	36	24	11	27	1.89
70974--71003	2	15.0	2	100	0	60	50	0	0	50	1.00
76192--76221	15	2.0	15	93	0	51	23	13	6	56	1.60
79495--79595	33	3.1	33	77	11	118	39	14	17	27	1.89
89272--89381	50	2.2	51	95	3	195	38	10	15	36	1.81
89279--89357	25	3.2	25	64	7	70	36	12	13	36	1.83
89333--89461	65	2.0	65	93	1	222	41	10	14	33	1.81
91382--91407	5	5.2	5	100	0	52	19	0	42	38	1.51
91695--91982	22	12.4	22	83	8	317	42	23	23	10	1.85
91695--91982	47	6.2	47	86	7	358	42	23	23	10	1.85
92983--93023	21	2.1	19	90	9	64	2	31	0	65	1.05
96816--96990	25	7.3	25	81	11	197	38	22	26	12	1.90
96816--96990	95	1.8	98	87	6	268	38	22	26	12	1.90
103139--103187	23	2.1	23	100	0	98	32	10	20	36	1.86
107795--107974	23	7.9	23	79	1	128	20	11	20	47	1.80
107799--107973	46	3.8	46	78	3	158	20	10	19	49	1.78
109062--109086	6	4.2	6	100	0	50	84	0	0	16	0.63
110126--110197	33	2.2	33	84	0	90	22	19	34	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116876--116948	20	3.7	19	80	15	78	57	5	2	34	1.36
116876--116953	19	4.0	19	80	15	65	55	5	2	37	1.36
126857--127011	73	2.1	74	91	2	249	52	15	11	20	1.74
135259--135345	43	2.0	43	97	0	165	28	16	27	27	1.97
148298--148382	17	5.1	17	79	1	100	35	1	5	57	1.30
148298--148380	34	2.5	33	92	3	139	34	1	6	57	1.31
148290--148383	34	2.5	39	76	18	117	36	1	5	57	1.28
149015--149062	16	3.0	16	79	11	62	62	0	0	37	0.95
150197--150376	30	6.2	30	78	6	190	35	30	2	32	1.72
150197--150376	58	3.1	58	83	3	227	35	30	2	32	1.72
152700--152836	30	4.6	30	85	3	143	37	25	2	34	1.68
152701--152862	30	5.4	29	81	8	141	37	24	1	35	1.67
152731--152883	30	5.1	29	74	10	103	37	26	3	33	1.73
152701--152898	61	3.3	61	79	9	162	35	26	4	34	1.75
153108--153147	19	2.2	19	86	4	55	25	15	12	47	1.80
156549--156581	16	2.1	16	88	11	50	24	9	6	60	1.49
160342--160377	19	2.0	19	89	10	58	72	2	11	13	1.23
175099--175136	19	2.0	20	89	5	60	26	0	2	71	1.00
175691--175780	31	2.9	31	74	14	103	38	10	2	48	1.49
175856--175893	20	1.9	20	84	10	51	55	5	5	34	1.45
179516--179542	12	2.2	12	100	0	54	77	7	0	14	0.97
179701--179804	12	8.2	12	70	15	66	69	17	3	9	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179676--179804	67	1.9	66	80	7	145	69	17	3	9	1.28
179713--179781	31	2.3	30	78	9	77	69	15	2	11	1.30
179687--179793	43	2.5	43	77	7	110	70	17	2	9	1.27
188441--188485	17	2.8	16	81	18	58	0	22	0	77	0.76
188441--188486	10	4.3	11	86	8	60	0	21	0	78	0.76
189022--189063	17	2.4	18	78	21	54	50	19	14	16	1.79
191252--191305	25	2.2	25	100	0	108	20	20	27	31	1.97
191252--191313	25	2.5	25	94	0	97	24	20	25	29	1.99
197983--198040	20	2.9	21	71	7	57	48	8	6	36	1.61
199858--199891	3	11.3	3	100	0	68	35	0	32	32	1.58
206316--206417	20	5.1	20	72	9	73	48	11	6	33	1.66
214584--214608	12	2.1	12	100	0	50	32	8	0	60	1.26
228140--228172	16	2.0	17	88	5	50	45	6	18	30	1.73
228160--228193	16	2.1	17	88	5	52	32	8	20	38	1.84
228254--228305	17	3.0	17	76	15	61	63	0	9	26	1.25
228475--228537	15	4.3	15	82	7	69	58	4	17	19	1.56
233152--233176	13	1.9	13	100	0	50	48	8	16	28	1.74
242851--242885	18	1.9	18	88	0	52	42	22	20	14	1.88
244622--244657	15	2.3	16	90	4	56	75	0	25	0	0.81
251184--251252	26	2.6	26	79	9	68	24	30	17	27	1.97
279541--279575	18	1.9	18	94	0	61	57	0	0	42	0.99
282184--282220	15	2.5	15	100	0	74	21	16	37	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285194--285233	19	2.1	19	100	0	80	42	15	22	20	1.88
288132--288170	18	2.2	18	85	0	51	15	10	12	61	1.56
288739--288776	19	2.0	19	85	10	51	76	0	23	0	0.79
302045--302086	17	2.4	18	78	21	54	50	19	14	16	1.79
302231--302274	21	2.1	21	83	8	54	4	31	9	54	1.52
315122--315170	19	2.6	19	90	0	71	44	16	18	20	1.86
315198--315240	20	2.2	20	86	0	59	13	18	41	25	1.88
344437--344479	16	2.6	16	81	3	50	18	6	4	69	1.29
352783--352816	17	2.1	17	88	5	52	50	17	0	32	1.47
358011--358044	14	2.4	14	90	0	50	17	11	5	64	1.45
371237--371424	19	9.9	20	71	15	87	36	2	3	57	1.28
371240--371460	9	23.7	9	67	18	87	33	3	4	58	1.33
376498--376558	31	2.0	31	83	6	79	37	13	14	34	1.85
377428--377469	21	2.0	22	85	4	59	26	11	0	61	1.30
381200--381252	23	2.3	23	86	0	70	9	13	15	62	1.54
381325--381362	19	2.0	19	100	0	76	21	5	26	47	1.71
386207--386249	22	1.9	23	85	4	61	48	6	6	37	1.57
387847--387897	5	10.0	5	76	19	52	17	1	3	76	1.03
391348--391387	18	2.2	18	90	0	62	40	25	17	17	1.91
396446--396505	21	2.8	20	78	9	66	33	23	18	25	1.97
401070--401155	18	4.8	17	78	8	75	39	3	6	50	1.47
401105--401153	17	2.8	18	81	9	57	48	0	6	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401902--401939	15	2.7	15	84	8	53	47	0	0	52	1.00
403069--403278	29	7.2	29	84	7	255	34	29	5	30	1.79
403052--403336	59	4.8	58	83	8	276	34	29	5	31	1.81
403069--403336	88	3.0	87	83	7	319	33	29	5	30	1.81
403052--403356	29	10.4	30	75	13	210	34	29	5	30	1.80
403523--403562	21	2.0	20	85	5	53	7	10	7	75	1.20
415137--415803	205	3.3	204	90	1	1012	36	21	22	20	1.96
416157--416242	17	4.8	18	75	13	72	39	2	6	51	1.42
416325--416357	14	2.3	15	89	5	50	57	24	3	15	1.52
417773--418093	30	10.9	30	77	9	270	31	27	4	36	1.77

Tables:   1   2