genome.fa.s11520.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011520.1 Kokia drynarioides strain JFW-HI SEQ_126506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  653816

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417772--418052	59	4.7	59	81	6	257	33	27	3	35	1.75
417876--418108	59	3.9	58	79	13	205	32	27	3	35	1.75
424662--424703	22	2.0	21	85	4	57	11	14	9	64	1.50
425986--426050	13	4.7	14	74	9	53	20	26	29	24	1.99
428556--428635	39	2.1	39	92	4	135	40	8	18	32	1.82
431021--431162	60	2.4	60	83	4	162	22	34	15	27	1.94
431021--431163	30	4.8	30	74	11	123	23	34	15	27	1.94
433292--433342	23	2.2	24	82	3	59	47	0	1	50	1.12
433302--433349	24	2.0	23	88	4	69	45	0	0	54	0.99
441517--441630	57	2.0	57	98	0	219	50	4	5	39	1.45
446588--446635	15	3.3	14	81	18	62	35	2	12	50	1.52
449890--449924	18	1.9	18	88	0	52	42	2	17	37	1.64
454005--454080	21	3.6	21	75	5	64	32	27	11	27	1.92
458139--458266	65	2.0	64	95	1	229	32	10	24	32	1.90
459148--459184	18	2.1	18	100	0	74	27	21	10	40	1.86
460486--460520	18	1.9	18	88	0	52	42	2	17	37	1.64
461464--461525	29	2.1	30	82	8	74	37	0	0	62	0.95
461971--462015	22	2.0	23	86	4	65	44	0	2	53	1.13
463062--463086	12	2.1	12	100	0	50	48	16	0	36	1.46
463800--463867	31	2.2	31	82	12	79	27	1	4	66	1.20
465184--465300	49	2.4	49	98	0	225	25	12	19	41	1.87
476887--476936	21	2.4	21	93	0	82	30	22	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480425--480480	21	2.8	20	86	10	71	26	1	19	51	1.57
480429--480489	21	3.0	21	81	11	56	29	1	19	49	1.58
480574--480627	8	7.6	8	73	23	50	37	0	0	62	0.95
480561--480617	12	3.9	15	74	21	50	35	1	0	63	1.05
480561--480617	31	2.0	27	86	13	78	35	1	0	63	1.05
480887--481017	59	2.2	59	94	0	226	48	9	7	34	1.63
481431--481465	18	1.9	18	94	0	61	48	5	20	25	1.71
483004--483110	48	2.3	46	81	4	124	64	2	0	31	1.14
483260--483299	11	3.7	11	83	3	55	60	0	22	17	1.37
483246--483299	22	2.3	23	87	6	74	59	0	22	18	1.38
484040--484097	10	6.2	10	82	5	52	43	0	0	56	0.99
496628--496660	15	2.1	16	94	5	59	60	0	12	27	1.32
497403--497469	29	2.2	31	84	5	102	35	13	8	41	1.76
502776--502815	20	2.0	20	90	5	62	45	7	12	35	1.70
507246--507271	12	2.2	12	100	0	52	42	15	7	34	1.75
511305--511895	297	2.0	295	84	2	765	32	21	14	31	1.93
512439--512627	27	7.0	27	76	2	173	23	22	13	40	1.89
512427--512638	108	2.0	107	83	0	271	24	21	12	41	1.88
512439--512626	81	2.3	81	75	3	191	23	22	12	40	1.88
512439--512651	54	3.9	54	81	0	237	23	22	12	40	1.88
512448--512651	27	7.6	27	74	2	149	23	21	13	41	1.88
521252--521287	16	2.4	16	90	9	58	5	11	2	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531742--531836	41	2.3	41	87	0	136	33	27	7	31	1.84
534007--534043	15	2.5	15	95	0	65	10	27	8	54	1.63
541463--541503	21	2.0	21	90	0	64	2	14	0	82	0.76
547949--547991	22	2.0	22	95	0	77	51	6	16	25	1.69
555056--555100	22	2.0	22	95	0	81	37	13	26	22	1.91
561368--561415	18	2.7	18	86	0	69	2	16	14	66	1.34
571771--571892	59	2.1	59	96	0	226	42	13	14	29	1.84
576671--576780	39	2.9	39	80	2	134	22	20	19	38	1.94
585974--586016	20	2.2	20	100	0	86	51	4	11	32	1.59
591070--591166	41	2.4	41	81	8	108	36	15	19	28	1.93
593091--593133	21	2.0	21	82	8	52	32	13	11	41	1.81
602857--602895	10	4.0	10	83	6	53	2	12	0	84	0.72
602848--602895	15	3.3	15	82	11	55	2	14	0	83	0.74
602848--602893	19	2.5	19	86	10	60	2	15	0	82	0.76
602847--602896	14	3.5	14	84	13	66	2	18	0	80	0.82
603916--603968	3	17.7	3	77	14	56	0	33	1	64	1.05
618812--618932	55	2.2	56	86	1	163	23	33	21	21	1.97
620368--620425	29	2.0	29	96	0	107	32	13	12	41	1.82
620589--620631	17	2.3	20	84	11	56	48	0	0	51	1.00
620827--620867	3	13.7	3	89	0	64	73	0	0	26	0.84
624508--624747	23	10.4	23	87	0	336	34	4	15	46	1.66
624817--624893	36	2.1	36	92	0	127	28	10	24	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625705--625739	16	2.1	17	89	10	54	34	0	14	51	1.42
627004--627071	34	2.0	34	94	0	118	22	25	19	33	1.97
635258--635306	14	3.6	14	71	18	50	18	20	6	55	1.64
635258--635315	25	2.3	25	87	0	80	18	18	5	56	1.59
649953--650012	30	2.1	29	81	12	70	41	1	5	51	1.33

Tables:   1   2

The End!