genome.fa.s11535.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011535.1 Kokia drynarioides strain JFW-HI SEQ_126521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141041

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8186--10781	647	4.0	645	82	4	2895	28	17	13	40	1.88
8173--10781	863	3.0	855	83	4	3130	28	17	13	40	1.87
8173--10781	216	12.1	216	81	3	2801	28	17	13	40	1.87
11324--13161	216	8.7	212	79	7	1695	39	14	18	27	1.89
11324--13159	423	4.4	423	80	5	2078	39	14	18	27	1.89
11868--13165	208	6.1	213	82	5	1361	39	14	18	27	1.89
14875--18508	216	17.3	214	75	11	2541	39	13	18	27	1.89
14880--18508	424	8.7	423	79	8	3563	39	13	18	27	1.89
20089--20167	32	2.5	32	95	0	140	31	10	18	39	1.84
21144--21773	207	3.0	212	83	6	819	41	13	17	28	1.87
21790--22497	214	3.3	214	83	5	769	38	13	19	28	1.89
32530--42649	216	48.0	208	79	8	8769	39	14	18	27	1.90
42673--42862	52	3.7	52	84	0	209	21	28	15	34	1.93
42912--42943	2	16.0	2	93	0	55	50	3	0	46	1.17
45732--45857	63	2.0	62	95	1	225	43	20	9	26	1.82
49629--49802	48	3.8	47	84	8	205	26	7	12	53	1.65
53062--53155	39	2.5	37	79	10	91	70	4	22	3	1.19
53145--53174	12	2.5	12	94	0	51	80	3	10	6	1.01
56265--56443	48	3.8	48	90	0	252	25	10	13	51	1.72
62990--63045	24	2.3	24	93	0	94	5	19	5	69	1.28
71663--71732	35	2.0	35	97	0	131	50	5	18	25	1.69
74198--74292	32	3.0	32	87	0	136	36	18	12	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74338--74436	39	2.5	39	91	0	162	52	14	6	27	1.64
77553--77626	26	3.0	25	77	15	73	4	21	1	72	1.08
79689--79732	22	2.0	21	83	12	54	25	13	2	59	1.46
90107--90132	10	2.6	10	100	0	52	53	0	15	30	1.42
90224--90265	23	1.9	21	85	9	57	35	0	16	47	1.47
90804--90834	13	2.4	13	100	0	62	54	9	29	6	1.57
94282--94329	7	7.1	7	92	2	73	14	0	12	72	1.11
97047--97124	20	4.1	18	80	11	77	50	12	5	32	1.63
97054--97124	19	3.6	19	81	9	72	50	14	5	29	1.65
97047--97123	40	2.0	38	84	5	100	49	12	5	32	1.63
102591--102672	27	3.0	28	67	15	71	34	28	10	26	1.90
102600--102687	28	3.2	28	67	15	74	32	28	10	28	1.90
102591--102700	55	2.0	55	96	0	202	33	28	10	28	1.89
108869--108905	19	2.0	19	89	5	58	8	13	5	72	1.24
116375--116424	23	2.3	23	86	6	68	52	2	6	40	1.38
116504--116572	20	3.5	19	78	6	66	47	14	5	31	1.68
116504--116572	19	3.5	20	80	6	68	47	14	5	31	1.68
120511--120550	15	2.6	15	84	4	53	5	15	5	75	1.15
124077--124151	5	14.8	5	71	2	51	16	8	6	69	1.34
124072--124114	10	4.3	10	78	0	50	16	4	9	69	1.31
124746--124926	48	3.8	48	93	0	281	24	9	13	53	1.69
131538--131568	16	2.0	16	93	6	55	29	25	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131700--131783	39	2.2	39	84	0	105	32	7	20	40	1.79
131736--131786	22	2.3	22	79	0	57	33	5	19	41	1.76
131794--131823	2	15.0	2	100	0	60	50	0	0	50	1.00
133652--133694	21	2.1	21	86	4	61	53	4	4	37	1.43
137232--137294	23	2.7	23	73	9	65	19	25	0	55	1.43
137234--137301	17	3.9	16	77	12	64	20	23	0	55	1.43
137881--137906	7	3.7	7	100	0	52	88	0	0	11	0.52

Tables:   1

The End!