genome.fa.s11688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011688.1 Kokia drynarioides strain JFW-HI SEQ_126681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152521

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6994--7232	52	4.6	52	87	2	320	35	24	15	24	1.94
10895--10946	25	2.1	25	85	0	68	36	21	5	36	1.77
12441--12538	37	2.6	36	72	15	92	44	1	2	52	1.19
12986--13038	21	2.5	22	75	6	56	64	0	1	33	1.05
21132--21193	31	2.0	31	100	0	124	19	16	12	51	1.76
29101--29135	18	1.9	18	94	0	61	34	0	0	65	0.93
48973--49016	18	2.4	18	100	0	88	27	34	18	20	1.96
49167--49202	7	5.1	7	100	0	72	13	72	0	13	1.13
52088--52145	19	3.4	19	66	24	56	17	15	25	41	1.89
52118--52166	19	2.5	19	86	3	71	14	12	22	51	1.75
52119--52166	13	3.7	13	81	10	62	14	10	22	52	1.72
52118--52167	20	2.5	21	84	12	70	14	12	22	52	1.74
53308--53332	10	2.5	10	100	0	50	52	8	0	40	1.31
58425--58457	2	16.5	2	93	0	57	45	0	0	54	0.99
58865--59160	147	2.0	146	81	6	339	33	10	5	50	1.59
59546--59656	56	2.0	56	87	0	159	47	19	14	18	1.82
60179--60221	16	3.0	14	83	13	52	53	2	37	6	1.41
60281--60325	21	2.1	21	95	0	81	33	26	13	26	1.93
60726--60807	34	2.4	34	87	0	119	45	1	9	43	1.44
61034--61070	18	2.1	18	90	10	58	29	2	0	67	1.04
63652--63708	29	2.0	29	96	0	105	33	24	10	31	1.89
65414--65478	26	2.5	26	70	12	60	44	3	1	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66703--66730	6	4.7	6	100	0	56	0	0	46	53	1.00
68372--68440	29	2.4	29	79	11	79	59	2	5	31	1.36
76429--76459	1	31.0	1	100	0	62	0	0	0	100	0.00
81305--81344	2	20.0	2	100	0	80	50	0	0	50	1.00
88095--88134	19	2.1	19	86	9	55	20	25	30	25	1.99
89599--89629	3	10.3	3	100	0	62	67	0	0	32	0.91
90920--90962	23	1.9	23	85	4	61	48	4	2	44	1.36
93233--93301	34	2.1	34	81	8	79	28	1	17	52	1.53
95374--95565	97	2.0	95	84	8	246	38	14	17	30	1.89
95796--96077	28	9.8	28	70	19	122	36	3	27	32	1.75
95772--96065	58	5.1	57	79	10	249	36	4	27	31	1.77
95792--96048	116	2.2	117	85	4	349	36	3	27	32	1.75
95795--96050	58	4.4	59	83	7	292	37	3	27	32	1.74
95795--96113	58	5.5	59	79	12	164	36	3	26	33	1.75
95998--96114	30	4.0	28	77	14	103	35	3	25	35	1.73
97159--97217	3	20.0	3	78	3	66	35	0	3	61	1.13
97979--98023	17	2.6	17	83	13	65	55	4	0	40	1.20
97965--98011	23	2.0	23	88	8	69	53	2	0	44	1.12
104152--104187	18	2.0	18	88	0	54	33	5	5	55	1.46
108030--108064	17	2.0	18	88	5	54	40	0	0	60	0.97
116103--116136	3	11.3	3	93	0	59	2	32	0	64	1.08
123320--123417	29	3.4	29	76	4	99	32	8	23	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123511--123589	28	2.8	27	81	12	97	35	2	27	34	1.71
123511--123810	59	5.1	57	77	12	238	35	2	24	37	1.68
123539--123819	29	9.7	29	74	15	206	35	2	23	38	1.67
125635--125964	58	5.6	56	78	9	284	33	2	26	37	1.70
125635--125975	117	2.9	115	80	5	362	32	2	26	38	1.69
125940--126064	30	4.2	30	74	11	105	34	4	24	37	1.74
125705--126064	89	4.1	89	73	10	281	33	3	26	37	1.72
125940--126160	59	3.7	59	80	7	200	32	3	26	37	1.74
125676--126160	29	16.5	29	71	17	243	32	3	27	37	1.72
127895--127931	15	2.5	15	86	0	56	24	0	27	48	1.51
127975--128014	17	2.3	18	87	12	57	45	2	2	50	1.28
135396--135493	29	3.4	29	76	4	99	32	8	23	35	1.84
135587--135665	28	2.8	27	81	12	97	35	2	27	34	1.71
135587--135886	59	5.1	57	77	12	238	35	2	24	37	1.68
135615--135895	29	9.7	29	74	15	206	35	2	23	38	1.67
137711--138040	58	5.6	56	78	9	284	33	2	26	37	1.70
137711--138051	117	2.9	115	80	5	362	32	2	26	38	1.69
138016--138140	30	4.2	30	74	11	105	34	4	24	37	1.74
137781--138140	89	4.1	89	73	10	281	33	3	26	37	1.72
138016--138236	59	3.7	59	80	7	200	32	3	26	37	1.74
137752--138236	29	16.5	29	71	17	243	32	3	27	37	1.72
139971--140007	15	2.5	15	86	0	56	24	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140051--140090	17	2.3	18	87	12	57	45	2	2	50	1.28
145111--145208	29	3.4	29	76	4	99	32	8	23	35	1.84
145302--145380	28	2.8	27	81	12	97	35	2	27	34	1.71
145302--145601	59	5.1	57	77	12	238	35	2	24	37	1.68
145330--145610	29	9.7	29	74	15	206	35	2	23	38	1.67
147426--147755	58	5.6	56	78	9	284	33	2	26	37	1.70
147426--147766	117	2.9	115	80	5	362	32	2	26	38	1.69
147731--147855	30	4.2	30	74	11	105	34	4	24	37	1.74
147496--147855	89	4.1	89	73	10	281	33	3	26	37	1.72
147731--147951	59	3.7	59	80	7	200	32	3	26	37	1.74
147467--147951	29	16.5	29	71	17	243	32	3	27	37	1.72
149686--149722	15	2.5	15	86	0	56	24	0	27	48	1.51
149766--149805	17	2.3	18	87	12	57	45	2	2	50	1.28
150058--151105	204	5.2	201	89	2	1526	20	22	20	36	1.95
150057--151110	406	2.6	405	89	2	1560	20	22	20	36	1.95

Tables:   1

The End!