genome.fa.s11696.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011696.1 Kokia drynarioides strain JFW-HI SEQ_126690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  540923

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235187--235225	19	2.1	19	90	0	60	20	25	20	33	1.97
237936--237973	20	1.9	19	89	5	58	39	28	0	31	1.57
242639--243119	152	3.1	151	80	7	549	36	17	10	35	1.85
249922--249985	30	2.2	30	80	8	78	29	3	15	51	1.59
254730--254771	21	2.0	22	85	4	59	11	19	4	64	1.44
276619--276663	22	2.0	22	100	0	90	31	31	4	33	1.78
278795--278838	23	2.0	22	86	4	61	38	0	15	45	1.47
294952--294976	8	3.1	8	100	0	50	12	12	28	48	1.76
304385--304420	17	2.2	17	90	5	56	19	8	11	61	1.54
306870--306907	18	2.2	18	90	4	60	0	18	5	76	0.97
306869--306915	21	2.2	22	81	11	53	2	17	4	76	1.04
322693--322740	15	3.2	15	85	5	53	33	6	25	35	1.81
323615--323652	15	2.4	16	82	13	51	52	0	26	21	1.47
325932--325980	25	1.9	26	91	4	82	55	18	0	26	1.43
327613--327649	18	2.2	17	86	13	51	29	5	10	54	1.57
366276--366305	16	1.9	16	93	6	53	60	3	16	20	1.50
374057--374112	25	2.2	25	93	0	94	28	30	16	25	1.96
376346--376432	45	1.9	45	80	0	102	32	14	13	39	1.86
376478--376517	21	1.9	21	85	10	55	40	25	15	20	1.90
380072--380125	26	2.1	27	86	13	78	22	9	12	55	1.65
392921--392990	30	2.4	30	76	7	72	27	0	5	67	1.13
395259--395330	37	1.9	37	94	0	126	54	4	4	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395259--395348	37	2.4	37	85	3	92	54	4	3	37	1.37
397090--397134	21	2.1	21	100	0	90	53	8	4	33	1.52
407840--407864	7	3.6	7	100	0	50	12	0	0	88	0.53
408516--408576	23	2.5	24	82	17	74	73	0	22	3	0.97
408518--408574	30	1.9	29	83	16	73	77	0	21	1	0.86
408682--409107	211	2.0	211	96	0	789	28	9	19	42	1.81
411834--411872	20	2.0	20	94	0	69	10	15	15	58	1.62
422535--422583	21	2.4	20	83	6	62	81	4	2	12	0.91
426091--426206	46	2.6	45	84	4	144	34	15	15	34	1.89
426091--426215	45	2.7	46	83	3	146	33	16	15	35	1.90
430002--430172	52	3.3	53	84	4	206	27	15	21	35	1.94
436951--436983	17	1.9	17	88	11	50	27	0	6	66	1.15
437202--437299	50	2.0	50	84	8	128	39	16	10	33	1.82
441572--441615	20	2.2	20	92	8	72	25	11	34	29	1.91
444495--444538	20	2.2	20	84	8	54	13	13	4	68	1.36
446781--446834	18	3.1	18	81	5	74	22	9	11	57	1.61
446781--446834	17	3.1	17	83	2	72	22	9	11	57	1.61
460613--460671	21	2.8	21	84	5	75	42	33	13	10	1.78
469359--469398	5	8.2	5	86	2	55	77	0	20	2	0.88
486324--486378	28	2.0	27	82	10	67	65	1	16	16	1.36
486989--487034	13	3.6	13	79	5	58	13	8	4	73	1.21
517707--517864	80	2.0	80	91	0	253	32	10	18	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521311--521515	109	1.9	109	84	4	279	32	11	16	40	1.83
524596--524620	7	3.6	7	100	0	50	88	0	12	0	0.53
527101--527127	14	1.9	14	100	0	54	37	14	11	37	1.82
528559--528603	17	2.6	17	92	0	72	13	22	15	48	1.79
532398--532772	49	7.7	49	79	7	368	33	16	28	22	1.95
532399--532787	147	2.6	146	83	4	444	33	15	28	22	1.95
534191--534466	49	5.7	48	77	5	232	35	15	26	22	1.94
538693--538732	18	2.3	18	86	4	55	55	12	15	17	1.70

Tables:   1   2

The End!