genome.fa.s11701.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011701.1 Kokia drynarioides strain JFW-HI SEQ_126695, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  550108

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391686--391737	23	2.3	23	83	6	61	69	7	5	17	1.33
391730--391791	23	2.7	23	82	0	70	70	17	3	8	1.25
391742--391809	12	5.8	12	70	3	57	72	16	2	8	1.22
391770--391824	21	2.6	20	83	11	65	72	14	0	12	1.12
391842--391881	20	1.9	21	85	10	55	72	17	2	7	1.19
399394--399430	15	2.5	15	86	0	56	51	0	0	48	1.00
401038--401093	27	2.0	28	93	3	96	46	19	16	17	1.84
410945--411407	254	1.8	254	93	0	811	39	24	4	31	1.75
411274--411491	112	1.9	113	90	4	350	39	24	4	32	1.74
411010--411487	23	20.9	23	73	3	354	38	24	4	31	1.76
426599--426644	18	2.6	18	100	0	92	21	21	17	39	1.93
429160--429283	46	2.7	46	93	0	203	33	11	16	38	1.84
443761--443890	49	2.7	49	81	4	138	23	20	19	36	1.95
444190--444225	17	2.2	16	95	5	63	22	22	27	27	1.99
445579--445747	85	2.0	85	92	0	284	32	14	10	42	1.80
445838--445882	19	2.4	19	85	7	56	44	4	2	48	1.35
446049--446116	29	2.3	30	80	7	68	55	1	7	35	1.37
448337--448410	33	2.2	33	100	0	148	36	13	36	13	1.84
452726--452780	9	5.8	9	75	24	51	50	0	0	49	1.00
452728--452769	22	1.9	22	90	9	68	50	0	0	50	1.00
452726--452812	31	2.9	31	86	3	115	49	0	1	49	1.08
452759--452802	22	2.0	22	86	4	61	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453511--453552	18	2.4	18	80	4	50	19	4	2	73	1.12
464080--464114	13	2.7	13	100	0	70	34	0	14	51	1.42
464469--464523	3	19.7	3	85	14	82	70	0	0	29	0.87
466346--466449	37	2.7	38	77	5	93	34	25	16	23	1.95
466552--466588	18	2.1	18	89	0	56	24	27	0	48	1.51
472440--472473	17	1.9	18	88	5	52	35	0	0	64	0.94
472459--472492	18	1.9	17	88	5	50	35	0	0	64	0.94
472697--472735	19	2.1	18	85	9	51	33	7	0	58	1.26
482703--482785	24	3.5	24	86	0	85	50	8	12	28	1.68
482719--482789	24	3.0	24	91	0	106	54	7	11	26	1.61
487902--488238	41	8.2	41	79	4	297	32	20	27	19	1.97
487920--488238	82	3.9	82	77	3	327	31	20	27	20	1.97
490561--490606	19	2.4	19	96	0	83	43	6	19	30	1.76
492113--492240	43	3.0	43	82	3	134	23	17	29	28	1.97
493382--493676	148	2.0	148	93	0	500	37	12	20	30	1.89
494910--494959	24	2.1	23	82	10	57	34	6	2	58	1.34
495676--495714	18	2.1	19	85	9	53	41	0	15	43	1.46
498816--498841	1	26.0	1	100	0	52	0	0	0	100	0.00
500089--500302	40	5.4	40	79	6	186	26	14	26	33	1.94
500089--500302	80	2.7	80	80	6	213	26	14	26	33	1.94
500089--500306	120	1.8	118	86	3	312	25	13	26	33	1.93
500356--500483	50	2.6	50	84	2	159	17	22	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500390--500496	50	2.1	50	82	3	126	19	19	23	37	1.94
511693--511806	51	2.2	53	82	4	144	49	9	11	29	1.71
515965--516009	22	2.0	22	82	0	54	53	0	0	46	1.00
520923--520964	18	2.3	18	88	8	59	66	0	2	30	1.04
527294--527342	26	1.9	26	91	4	82	63	2	0	34	1.06
527771--527836	18	3.8	18	76	9	57	27	4	3	65	1.27
528372--528420	10	5.0	10	76	14	57	67	2	2	28	1.13
528370--528412	21	2.0	21	82	8	52	67	4	2	25	1.22
528923--529133	90	2.3	91	79	8	232	39	19	8	32	1.82
529208--529245	20	1.9	20	88	0	58	34	13	13	39	1.83
529309--529382	25	2.8	26	78	17	82	66	0	1	32	1.00
529480--529722	90	2.7	88	82	9	264	35	10	16	37	1.83
529852--529895	20	2.2	20	87	0	61	65	27	4	2	1.23
530276--531013	122	6.1	121	83	5	810	30	18	14	36	1.91
530276--531013	61	12.1	60	74	10	554	30	18	14	36	1.91
530276--531014	59	12.2	59	74	12	525	30	18	14	36	1.91
531905--531959	17	3.5	17	71	19	64	58	3	12	25	1.51
531905--532001	30	3.3	30	89	1	124	61	3	8	26	1.39
531920--532002	29	2.8	29	88	1	112	63	2	7	26	1.32
532265--532669	202	2.0	202	97	0	765	28	17	26	27	1.98
533552--533585	17	2.1	16	89	10	52	73	0	2	23	0.97
534474--534524	22	2.3	22	79	0	57	27	9	25	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534624--535340	84	8.5	84	89	2	1048	46	5	4	43	1.47
534624--535340	167	4.3	168	90	3	1068	46	5	4	43	1.47
534624--535336	251	2.8	251	90	3	1076	46	5	4	43	1.47
534624--535323	250	2.8	251	90	3	1068	46	5	5	43	1.48
535455--535511	28	2.0	28	89	0	87	43	7	0	49	1.29
535463--535511	16	3.3	16	72	21	52	46	8	0	44	1.33
539240--539741	60	8.3	60	77	7	419	36	16	19	27	1.93
539240--539749	119	4.2	120	83	5	539	36	16	19	27	1.93
542547--542912	84	4.4	84	89	2	538	47	5	4	42	1.46
542547--542912	166	2.2	167	89	4	549	47	5	4	42	1.46
543027--543083	28	2.0	28	89	0	87	43	7	0	49	1.29
543035--543083	16	3.3	16	72	21	52	46	8	0	44	1.33
546812--547313	60	8.3	60	77	7	419	36	16	19	27	1.93
546812--547321	119	4.2	120	83	5	539	36	16	19	27	1.93

Tables:   1   2

The End!