genome.fa.s11744.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011744.1 Kokia drynarioides strain JFW-HI SEQ_126738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  444708

Tables:   1   2   

This is table  2  of  2  ( 215 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233007--233124	10	12.3	9	71	12	58	27	4	1	66	1.19
233007--233124	29	4.1	28	69	18	73	27	4	1	66	1.19
233230--233411	88	2.1	88	82	10	221	37	7	14	39	1.75
237541--237574	17	2.0	17	94	0	59	35	2	35	26	1.72
243773--243832	21	2.9	21	80	11	70	11	36	21	30	1.89
251005--251029	12	2.1	12	100	0	50	48	0	12	40	1.40
251597--251653	30	1.9	29	85	3	78	57	8	1	31	1.39
254446--254485	21	2.0	20	85	5	53	47	5	2	45	1.38
265661--265922	33	7.9	32	74	9	202	28	24	17	29	1.97
265760--265890	69	1.9	71	83	3	176	28	26	16	29	1.97
265742--265965	102	2.2	102	90	0	349	29	25	16	29	1.96
269003--269059	18	3.4	17	83	9	57	49	0	10	40	1.37
269010--269061	8	6.1	8	87	12	77	48	0	11	40	1.40
269010--269061	25	2.0	26	96	3	97	48	0	11	40	1.40
269010--269063	18	3.1	18	89	7	76	48	0	11	40	1.39
269157--269346	22	8.6	22	72	6	134	20	22	19	38	1.94
269157--269334	66	2.7	67	82	5	193	20	21	18	39	1.93
269634--269687	21	2.6	21	82	5	65	33	25	11	29	1.91
272887--272956	22	3.2	22	82	8	97	35	15	25	22	1.94
273162--273208	25	1.9	23	83	12	58	42	19	4	34	1.70
275256--275293	14	2.6	15	80	19	53	52	13	0	34	1.40
283508--283559	21	2.6	20	90	6	79	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284873--284947	26	2.8	26	82	6	80	29	16	10	44	1.81
285292--285331	16	2.5	16	91	0	62	45	37	0	17	1.49
286421--286514	29	3.2	28	86	8	127	38	17	1	43	1.56
286417--286624	30	7.0	30	76	10	151	35	22	1	40	1.65
286439--286629	60	3.2	59	78	5	172	35	22	1	40	1.64
290402--290498	25	3.9	25	81	5	106	24	17	23	34	1.96
290402--290499	50	2.0	50	87	4	144	24	17	23	34	1.96
290522--290691	25	6.8	25	78	5	139	24	17	24	34	1.96
294595--294701	27	4.0	27	73	7	83	36	17	24	21	1.95
294597--294722	54	2.3	54	79	0	126	35	17	24	22	1.95
299382--299408	7	3.9	7	100	0	54	11	0	0	88	0.50
300352--300410	24	2.6	21	81	10	64	71	8	3	16	1.25
303684--303712	12	2.5	12	94	5	51	62	6	17	13	1.52
308692--308956	44	6.2	44	71	12	158	25	24	11	38	1.89
308733--308956	86	2.6	86	80	2	209	25	24	11	39	1.88
314933--314986	21	2.6	21	76	5	56	35	27	7	29	1.84
315620--315716	41	2.4	40	81	6	97	27	22	8	41	1.82
315703--315895	42	4.5	43	78	8	144	26	24	8	39	1.84
315736--315895	42	3.7	41	79	8	158	26	24	10	38	1.88
315689--315927	86	2.8	87	81	3	232	26	23	10	38	1.88
315777--315906	44	3.0	44	84	4	183	23	24	12	40	1.89
317771--317809	17	2.3	17	82	8	53	41	12	10	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318349--318424	21	3.6	21	80	3	82	28	11	26	32	1.92
324257--324291	2	17.5	2	87	0	52	0	54	0	45	0.99
324257--324290	12	2.8	12	100	0	68	0	55	0	44	0.99
331270--331312	17	2.4	18	88	11	63	48	0	0	51	1.00
331279--331318	18	2.3	17	82	4	53	55	2	0	42	1.13
331805--331867	27	2.2	29	80	5	76	50	7	1	39	1.41
333770--334218	224	2.0	224	99	0	880	40	12	9	36	1.77
334762--334812	22	2.3	22	78	18	61	47	5	0	47	1.26
336130--336212	29	2.9	30	75	10	84	59	3	4	32	1.36
336205--336238	17	2.1	16	88	5	50	58	8	0	32	1.29
338148--338186	17	2.3	17	86	8	53	33	2	25	38	1.70
340560--340618	21	2.8	21	79	5	66	28	25	15	30	1.96
342932--343074	48	3.0	49	76	12	125	41	25	16	17	1.89
345695--345789	27	3.5	26	68	21	68	23	18	28	29	1.98
345722--345817	29	3.4	29	65	21	76	21	18	28	31	1.97
345607--345836	56	4.1	56	83	5	279	23	18	26	32	1.97
356406--356561	80	2.0	80	89	5	244	22	18	27	31	1.97
359087--359173	41	2.1	41	82	2	113	19	18	33	28	1.95
359051--359223	93	1.9	94	85	1	240	20	17	32	30	1.95
359040--359152	52	2.2	53	76	10	117	18	15	35	30	1.92
359144--359260	53	2.2	53	84	0	144	18	14	35	31	1.91
361376--361427	18	3.0	18	81	10	56	46	1	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365838--365874	19	1.9	19	89	10	58	18	21	0	59	1.38
369353--369447	26	3.7	26	91	5	156	28	25	24	22	1.99
372594--372646	25	2.0	26	85	7	72	54	7	9	28	1.59
379457--379524	34	2.0	34	94	0	118	51	7	14	26	1.68
384543--384597	18	3.1	18	76	5	58	74	0	25	0	0.82
387129--387175	24	2.0	24	87	8	69	27	14	8	48	1.73
388171--388207	19	1.9	19	88	0	56	29	18	21	29	1.97
391080--392252	101	11.7	100	78	5	906	37	17	17	27	1.92
391080--392351	50	25.3	50	66	11	429	38	17	17	27	1.92
391080--392266	100	11.8	100	78	5	896	37	17	17	27	1.92
398385--398471	44	2.0	43	97	0	156	35	16	11	35	1.84
402509--402556	17	2.8	19	79	17	52	20	18	6	54	1.65
407667--407826	80	2.0	79	82	3	196	40	17	13	28	1.87
407778--408707	50	18.6	49	69	12	423	36	17	19	26	1.94
407748--408642	101	8.9	99	80	6	853	35	17	18	27	1.94
407787--408656	400	2.2	400	84	4	1121	35	18	18	27	1.94
409073--409104	14	2.2	15	94	5	57	50	18	6	25	1.70
409069--409106	13	2.8	14	85	14	53	44	15	7	31	1.75
411752--411819	29	2.4	28	82	4	91	22	5	2	69	1.24
411990--412031	17	2.5	17	76	3	50	23	7	4	64	1.38
415108--415241	70	1.9	70	89	1	207	44	26	5	22	1.75
425193--425236	19	2.3	20	81	18	58	4	29	0	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426077--426110	12	3.0	12	91	8	54	35	0	14	50	1.44
427968--427996	2	14.5	2	100	0	58	48	0	0	51	1.00
430136--430265	52	2.5	52	79	0	152	33	16	23	26	1.96
430136--430269	26	5.2	26	77	0	135	32	16	24	26	1.96
430316--430374	26	2.3	26	81	0	73	27	16	32	23	1.96
432561--432680	58	2.1	58	84	6	154	49	18	0	31	1.54
440375--440651	150	1.9	146	81	7	335	28	20	15	35	1.93

Tables:   1   2

The End!