genome.fa.s11785.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011785.1 Kokia drynarioides strain JFW-HI SEQ_126780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138696

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323--531	86	2.4	86	81	4	242	26	21	28	23	1.99
690--940	86	2.9	86	82	0	304	22	18	33	25	1.96
701--968	86	3.1	86	78	2	198	22	19	32	25	1.97
1035--1244	86	2.4	86	80	3	217	23	22	30	22	1.99
1663--1826	43	3.8	43	78	7	138	18	21	32	26	1.97
2294--2517	122	1.8	122	84	3	308	27	20	27	24	1.99
2407--3007	86	7.1	82	73	8	255	25	20	29	23	1.99
2764--3010	86	2.9	86	79	4	309	23	18	33	25	1.97
2764--3052	86	3.4	85	77	4	301	22	18	32	26	1.97
3192--3465	86	3.2	85	78	5	212	23	22	30	23	1.99
3308--3931	172	3.7	172	74	7	418	25	21	30	22	1.99
3392--3628	86	2.8	85	77	8	228	25	20	31	22	1.98
3308--3784	166	2.8	166	79	6	417	26	21	29	22	1.99
3724--3939	86	2.5	86	80	1	236	24	21	32	21	1.98
3791--3980	86	2.2	86	79	3	204	23	22	30	23	1.99
3998--4124	43	3.0	43	77	4	141	18	21	33	26	1.97
4560--5486	86	10.9	86	76	4	496	24	20	31	24	1.98
5254--5395	43	3.3	43	67	7	126	25	18	32	23	1.97
4554--5501	172	5.6	169	75	7	675	24	20	31	24	1.98
5510--5702	43	4.5	43	84	0	206	21	24	30	23	1.99
6498--6585	43	2.0	43	82	0	104	20	19	32	27	1.97
6731--6908	43	4.2	43	77	4	180	21	25	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6731--6888	85	1.9	85	82	0	199	21	25	28	24	1.99
12631--13042	43	9.6	43	80	2	382	19	26	30	23	1.98
12630--13042	129	3.2	128	78	2	432	19	26	30	23	1.98
12630--13042	86	4.8	85	79	3	441	19	26	30	23	1.98
23417--23453	18	2.1	18	89	0	56	27	18	10	43	1.83
24598--24629	5	6.4	5	96	0	55	3	15	0	81	0.82
26458--26521	29	2.3	28	79	12	78	65	18	3	12	1.38
30896--30933	17	2.2	17	86	9	51	15	13	15	55	1.70
34335--34377	17	2.6	17	88	3	61	30	0	6	62	1.21
34328--34387	23	2.6	24	78	7	70	33	0	6	60	1.23
34465--34499	18	1.9	18	88	0	52	57	31	0	11	1.34
36009--36292	59	4.9	58	78	10	233	34	24	5	35	1.79
35944--36325	29	13.0	30	74	15	218	33	25	6	34	1.81
35943--36233	88	3.3	86	78	10	259	33	24	5	36	1.79
35984--36292	88	3.6	87	78	8	281	33	24	5	35	1.80
35948--36268	30	11.0	29	77	8	163	33	25	6	34	1.81
36333--36389	30	2.0	29	86	6	80	38	24	1	35	1.66
36644--36826	97	1.9	97	91	0	303	30	14	16	38	1.89
48284--49091	39	20.7	39	65	17	272	26	30	18	24	1.98
48284--48609	79	4.2	78	77	7	300	27	30	18	24	1.98
48435--48802	194	1.9	195	81	4	456	26	29	18	25	1.98
48597--49153	78	7.2	78	81	4	538	25	30	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49588--49672	17	5.0	17	86	0	107	32	0	5	61	1.20
49583--49681	6	16.8	6	73	11	53	35	1	5	58	1.27
50321--50386	25	2.6	25	79	13	64	36	4	1	57	1.28
51334--51395	30	2.1	30	81	3	72	38	24	3	33	1.71
51371--51578	28	7.2	29	78	9	167	37	24	3	35	1.72
51413--51584	57	3.0	56	76	12	170	34	26	4	33	1.77
51947--52136	97	2.0	97	90	0	299	29	16	16	37	1.91
53674--53703	2	15.0	2	92	0	51	50	3	0	46	1.18
54113--54146	18	1.9	17	88	5	50	38	17	2	41	1.65
66565--66608	23	2.0	22	86	4	61	38	0	15	45	1.47
81181--81224	18	2.4	19	81	11	56	0	34	2	63	1.07
90531--90567	18	2.0	20	89	10	60	54	8	8	29	1.59
91145--91251	55	1.9	55	98	0	205	34	22	10	32	1.88
100098--100144	7	6.2	8	80	9	55	87	0	10	2	0.63
100098--100148	19	2.8	18	88	11	77	86	0	11	1	0.66
100098--100168	18	3.9	18	76	8	65	81	0	14	4	0.83
101102--101241	50	2.8	49	76	4	136	36	17	28	17	1.93
101096--101370	49	5.6	49	76	6	193	35	16	29	18	1.93
101751--102327	39	15.5	38	70	19	243	24	32	18	24	1.97
101867--101992	33	3.6	33	73	14	110	25	28	19	26	1.98
101820--102431	72	8.3	72	74	8	399	25	31	18	24	1.98
101751--102327	221	2.6	221	83	3	730	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101964--102416	78	6.0	78	76	8	382	25	31	18	24	1.97
102575--103114	205	2.6	208	83	2	658	38	17	20	23	1.93
103053--103123	37	1.9	37	94	0	124	38	19	19	22	1.94
102929--103275	161	2.2	161	93	2	581	34	19	23	22	1.96
103166--103334	86	2.0	85	87	3	241	33	17	26	23	1.96
104319--104366	6	8.0	6	95	0	87	2	0	47	50	1.12
104320--104367	24	2.0	24	100	0	96	4	0	45	50	1.21
105246--105733	30	16.6	30	76	11	395	36	23	1	38	1.64
105241--105733	59	8.4	59	81	6	459	35	23	1	38	1.64
105265--105738	117	4.1	114	80	8	431	36	23	1	38	1.65
105863--105920	14	4.0	15	78	13	59	24	8	5	62	1.45
105891--105923	16	2.1	16	94	0	57	27	12	6	54	1.60
131975--132007	17	1.9	17	100	0	66	48	12	21	18	1.80

Tables:   1

The End!