genome.fa.s11790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011790.1 Kokia drynarioides strain JFW-HI SEQ_126785, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117673

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10642--10671	14	2.2	14	94	5	53	30	23	10	36	1.87
17741--17925	52	3.6	52	82	0	210	27	14	22	36	1.92
18414--18492	39	2.0	39	95	0	140	25	10	30	34	1.89
25387--25444	21	2.8	21	86	0	89	36	13	15	34	1.87
37275--37315	12	3.5	12	90	3	57	4	29	2	63	1.28
47264--47310	24	1.9	25	83	12	62	48	8	14	27	1.73
49077--49285	43	4.9	43	86	2	267	37	10	17	34	1.83
50046--50081	2	18.0	2	100	0	72	0	0	50	50	1.00
52422--52457	18	2.0	18	94	0	63	47	16	8	27	1.75
54323--54412	46	2.0	46	100	0	180	41	17	16	24	1.90
63195--63273	37	2.1	38	83	2	97	32	26	13	26	1.94
63364--63416	25	2.1	26	92	3	90	24	16	26	32	1.97
65759--65841	37	2.2	37	84	0	103	31	30	15	22	1.95
65833--65930	38	2.6	37	82	7	117	30	25	14	29	1.95
65920--65973	26	2.1	26	86	6	74	27	18	24	29	1.98
69673--69715	21	2.0	22	90	4	70	44	2	20	32	1.65
71530--71608	21	3.8	21	73	6	72	29	18	22	29	1.98
74757--75008	36	6.9	36	81	4	288	30	10	21	37	1.87
91589--91637	17	2.9	17	78	0	53	18	18	14	48	1.80
94642--94695	27	2.0	27	82	7	65	31	31	11	25	1.91
101933--101979	12	3.4	14	77	14	53	63	2	31	2	1.18
108376--109019	45	14.2	45	84	3	752	36	6	15	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116810--117552	371	2.0	371	89	1	1139	35	17	20	26	1.95

Tables:   1

The End!