genome.fa.s11834.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011834.1 Kokia drynarioides strain JFW-HI SEQ_126830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  294964

Tables:   1   2   

This is table  2  of  2  ( 149 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254452--254519	6	11.3	6	73	14	52	41	2	4	51	1.37
255256--255323	3	22.0	3	79	11	75	60	1	1	36	1.15
255821--255900	30	2.7	29	80	5	97	36	26	3	33	1.74
255833--256105	30	9.3	29	71	22	164	32	29	3	34	1.75
255908--256107	29	6.9	28	71	20	128	31	30	3	34	1.75
255822--256218	58	6.7	59	77	8	305	33	27	4	34	1.77
255823--256129	117	2.6	115	78	10	313	32	28	3	34	1.76
255823--256165	117	2.9	117	78	9	283	33	27	4	34	1.76
256203--256264	27	2.2	28	80	11	74	32	25	11	30	1.91
268167--268611	201	2.3	193	83	5	545	35	17	22	23	1.95
268999--269024	11	2.4	11	100	0	52	46	0	7	46	1.31
269757--269815	3	19.3	3	83	10	75	59	1	0	38	1.08
270748--270922	30	5.9	30	71	14	114	35	24	2	37	1.70
270790--271016	59	3.8	59	74	11	169	35	23	3	37	1.74
270879--270974	29	3.3	29	71	17	81	38	28	3	30	1.72
270815--271039	59	3.8	57	77	9	168	34	22	4	37	1.76
271995--272035	20	2.0	20	85	0	55	24	17	12	46	1.82
273131--273313	97	1.9	96	82	5	226	35	13	21	30	1.91
273618--274046	30	14.6	29	83	4	520	29	1	32	36	1.67
273618--274046	59	7.3	58	85	4	583	29	1	32	36	1.67
275127--275165	19	2.0	20	90	5	62	43	0	2	53	1.14
275900--275958	6	10.2	6	78	7	68	52	3	0	44	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275900--275990	17	5.2	17	82	7	112	53	4	0	41	1.21
275900--275990	35	2.6	34	86	6	112	53	4	0	41	1.21
276734--277498	217	3.5	218	93	1	1295	21	22	21	34	1.97
277962--278019	27	2.1	27	84	6	73	58	6	22	12	1.57
277974--278033	27	2.2	28	82	14	72	56	8	18	16	1.64
286812--286869	27	2.1	27	84	6	73	58	6	22	12	1.57
286824--286883	27	2.2	28	82	14	72	56	8	18	16	1.64

Tables:   1   2

The End!