genome.fa.s11859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011859.1 Kokia drynarioides strain JFW-HI SEQ_126856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112272

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690--747	21	2.7	22	76	7	57	24	6	32	36	1.82
9052--9139	45	2.0	45	95	0	158	18	27	13	40	1.88
10604--10660	30	1.9	29	85	3	78	43	7	1	47	1.40
10828--10863	14	2.4	16	86	13	58	44	2	0	52	1.15
10828--10868	15	2.7	15	85	11	57	48	2	0	48	1.14
21529--21588	26	2.3	26	85	0	75	38	13	5	43	1.66
26342--26388	25	1.9	25	91	4	78	17	2	17	63	1.40
27087--27130	10	4.4	10	83	11	54	29	6	0	63	1.20
28811--28863	22	2.5	20	72	21	54	47	1	1	49	1.23
28819--28874	22	2.4	24	85	5	71	57	1	1	39	1.20
28826--28874	24	2.1	22	88	7	71	59	0	0	40	0.98
30158--30206	23	2.1	23	85	7	64	53	4	4	38	1.39
42911--42969	24	2.5	24	81	10	66	32	5	1	61	1.28
43573--43765	10	19.3	10	67	16	53	65	3	5	26	1.29
43573--43627	22	2.5	20	75	18	56	67	1	3	27	1.17
43588--43673	37	2.3	38	80	8	95	69	2	4	23	1.18
43661--43736	31	2.5	30	80	17	86	63	1	7	27	1.30
43741--43800	22	2.8	21	76	18	61	70	5	0	25	1.08
44156--44185	9	3.3	9	95	0	51	63	0	0	36	0.95
49130--49202	24	3.0	24	97	0	137	17	4	41	36	1.69
50803--50840	2	19.0	2	100	0	76	50	0	0	50	1.00
51567--51623	24	2.4	24	84	0	78	50	12	10	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54222--54575	183	1.9	183	87	2	514	27	18	16	37	1.92
55156--55190	18	2.0	18	88	5	54	51	0	0	48	1.00
56841--57665	111	7.4	111	81	5	768	36	11	17	35	1.85
56839--57791	222	4.2	222	80	6	870	37	10	17	35	1.84
56838--57712	333	2.6	328	80	7	912	36	11	17	34	1.85
60702--60729	13	2.2	13	100	0	56	57	0	0	42	0.99
63939--63986	11	4.2	11	78	7	51	43	2	2	52	1.24
63918--64009	6	16.0	6	72	15	61	44	1	2	52	1.20
63946--64010	23	2.8	24	79	4	71	47	1	1	49	1.20
63918--64009	17	5.4	17	80	6	105	44	1	2	52	1.20
65087--65215	65	2.0	65	89	0	195	20	26	39	13	1.89
65832--66359	29	18.0	29	72	13	332	34	27	4	33	1.77
65822--66288	59	7.9	58	76	10	233	34	27	4	33	1.77
65829--66361	88	6.0	88	75	9	417	33	28	4	33	1.77
65884--66351	59	7.9	58	77	9	332	34	28	3	32	1.75
66644--66826	96	1.9	95	85	7	255	30	17	14	38	1.89
67250--67319	22	3.1	22	83	2	77	15	25	17	41	1.89
70788--70832	4	11.0	4	85	4	63	71	2	0	26	0.98
70788--70836	25	2.0	23	88	7	71	69	2	0	28	1.00
70880--70935	29	2.0	28	85	3	76	46	10	0	42	1.38
71831--71871	19	2.2	19	91	8	66	21	9	9	58	1.59
73823--73881	4	14.8	4	72	13	50	18	1	5	74	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73823--73899	11	7.3	10	71	23	52	19	3	3	72	1.16
73822--73882	33	1.9	33	86	6	90	18	1	4	75	1.06
73823--73899	37	2.1	36	81	13	86	19	3	3	72	1.16
80059--80110	21	2.5	21	87	0	68	40	19	15	25	1.90
80509--80541	16	2.1	16	94	0	57	51	21	6	21	1.69
80803--80971	50	3.3	50	81	5	169	36	26	15	22	1.94
80847--80959	25	4.5	25	73	0	91	33	30	13	22	1.92
84110--84170	29	2.1	29	96	0	113	27	0	26	45	1.54
84218--84341	30	4.1	30	92	3	196	39	1	24	34	1.65
85377--85417	15	2.7	15	88	0	55	34	0	2	63	1.08
85379--85410	11	2.8	12	90	9	50	34	0	3	62	1.11
86014--86079	17	3.2	22	72	24	70	53	4	3	39	1.37
86030--86094	17	3.9	16	84	9	85	53	4	1	40	1.31
86014--86094	6	14.3	6	70	21	59	53	3	2	40	1.32
86468--86898	39	11.1	38	73	13	306	27	20	28	24	1.99
86478--86911	78	5.6	78	82	3	495	26	20	28	24	1.99
86478--86894	157	2.7	156	85	2	543	26	20	28	24	1.99
91685--91746	32	1.9	32	100	0	124	17	22	12	46	1.82
100409--100444	16	2.2	16	90	0	54	25	13	19	41	1.88
103176--103350	43	4.1	43	82	2	165	32	24	14	29	1.95
106243--106344	34	2.8	36	82	14	129	20	27	18	33	1.96
106243--106384	75	1.9	75	79	5	162	22	27	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106317--106504	41	4.6	41	76	5	155	20	29	18	30	1.97
106506--106668	40	4.1	40	84	4	213	22	19	19	39	1.93
106492--106668	80	2.2	80	87	1	246	22	19	19	38	1.93
107835--107859	9	2.8	9	100	0	50	20	20	0	60	1.37
109691--109719	10	2.7	11	89	10	51	62	0	6	31	1.22

Tables:   1

The End!