genome.fa.s11952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011952.1 Kokia drynarioides strain JFW-HI SEQ_126950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  350774

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4662--4739	21	3.8	21	77	1	59	42	17	8	30	1.81
8163--8200	5	7.6	5	100	0	76	60	0	0	39	0.97
14696--14763	29	2.4	28	87	7	93	20	17	2	58	1.51
18851--18891	21	1.9	22	90	5	66	56	4	0	39	1.21
18911--18975	26	2.5	24	73	11	67	46	0	1	52	1.10
26050--26079	14	2.1	14	93	0	51	46	13	40	0	1.43
29775--29860	28	3.1	28	89	3	120	40	24	15	19	1.90
32395--32459	28	2.3	28	81	5	78	40	23	13	23	1.90
36716--36758	11	3.9	11	93	0	77	44	0	2	53	1.13
37436--37505	9	7.8	9	76	16	65	48	0	0	51	1.00
37409--37509	46	2.3	44	86	8	143	48	0	0	50	1.07
37409--37509	20	4.6	20	75	22	87	48	0	0	50	1.07
39784--39916	46	2.9	46	86	2	160	29	24	6	39	1.81
40051--40143	21	4.4	21	83	5	116	45	23	3	27	1.68
53623--53824	105	1.9	105	86	4	291	29	26	12	31	1.93
54592--54624	5	6.8	5	93	6	59	81	0	0	18	0.68
59522--59571	16	3.1	16	78	13	50	42	0	0	58	0.98
67154--67512	180	2.0	178	94	2	632	37	5	8	47	1.58
68907--68956	23	2.2	22	82	10	57	68	8	8	16	1.38
70539--70663	62	2.0	62	100	0	250	44	14	9	31	1.77
71268--71317	20	2.5	20	83	0	73	38	38	6	18	1.75
72183--72579	158	2.5	158	92	1	643	30	27	22	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72725--72752	2	14.0	2	100	0	56	50	0	0	50	1.00
76537--76592	27	2.1	27	80	12	62	33	16	28	21	1.95
80819--80855	15	2.4	16	82	13	51	75	2	2	18	1.04
85253--85372	59	2.0	59	98	0	231	40	10	16	31	1.83
87410--87446	15	2.5	15	91	4	58	59	13	5	21	1.54
87480--87650	43	4.0	43	79	10	163	34	23	14	27	1.94
91100--91177	35	2.2	36	78	15	92	44	0	3	51	1.19
91248--91361	41	2.8	41	84	0	129	22	27	16	33	1.96
96217--96260	22	2.0	22	86	8	63	50	2	4	43	1.35
98828--98909	41	2.0	41	95	0	146	35	15	20	28	1.94
99650--100087	218	2.0	220	94	1	774	39	15	16	28	1.89
103223--103285	26	2.4	26	71	5	65	28	17	23	30	1.97
103250--103332	38	2.2	38	84	0	103	26	13	21	38	1.90
109135--109231	46	2.1	46	86	7	133	52	0	1	46	1.07
109135--109216	22	3.6	21	72	24	60	50	0	1	48	1.08
111995--112132	50	2.7	52	81	11	162	36	11	15	36	1.84
112327--112359	17	1.9	17	88	11	50	66	6	0	27	1.15
115736--115938	70	2.9	70	93	1	336	34	9	17	37	1.83
123130--123171	12	3.7	12	87	6	61	71	2	4	21	1.16
125035--125067	16	2.0	17	94	5	59	27	0	0	72	0.85
129065--129107	9	4.8	9	80	8	52	86	2	0	11	0.67
129065--129108	22	2.0	21	86	4	61	86	2	0	11	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129064--129111	17	2.8	17	87	9	62	83	2	0	14	0.74
145363--145413	25	2.0	25	96	0	93	23	17	11	47	1.81
146080--146723	49	13.2	49	76	3	366	41	17	21	20	1.91
146047--146603	147	3.8	146	79	3	573	40	16	22	20	1.91
148378--148430	12	4.3	12	79	11	54	16	3	5	73	1.17
148531--148582	11	4.4	11	78	21	52	28	0	3	67	1.08
148565--148607	15	2.8	16	82	7	52	25	0	6	67	1.15
148563--148613	16	3.6	14	80	19	54	25	1	5	66	1.24
150784--150942	55	2.9	55	85	0	210	27	19	27	26	1.99
154260--154369	56	2.0	56	90	0	175	28	22	19	30	1.98
178027--178073	19	2.5	19	77	19	53	68	2	12	17	1.31
182186--182226	21	2.0	21	85	9	57	48	14	7	29	1.71
182433--182570	50	2.7	50	84	5	170	36	11	15	36	1.84
184765--184968	101	2.0	101	100	0	408	42	17	18	21	1.90
194475--194520	20	2.2	20	84	3	56	47	19	8	23	1.77
219260--219284	9	2.8	9	100	0	50	88	0	0	12	0.53
230058--230178	50	2.4	51	78	9	131	37	13	12	37	1.82
230380--230412	17	1.9	17	88	11	50	66	6	0	27	1.15
231061--231215	84	1.8	84	94	0	274	30	24	14	29	1.95
244969--245001	16	2.1	16	94	0	57	36	21	6	36	1.78
251539--251592	17	3.1	17	83	2	63	55	9	14	20	1.66
255969--256010	21	2.0	21	82	13	52	59	2	9	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262753--262791	17	2.3	17	86	0	51	20	17	12	48	1.80
264124--264279	50	3.1	52	75	11	137	37	15	12	35	1.85
266599--266640	21	2.0	21	81	9	50	64	0	26	9	1.24
268199--268313	50	2.2	52	80	6	128	36	19	11	33	1.87
270348--270380	17	1.9	17	88	11	50	27	0	6	66	1.15
272847--273019	41	4.2	41	87	3	215	27	27	9	35	1.87
274675--274707	17	1.9	17	88	11	50	27	0	6	66	1.15
277102--277175	24	3.3	24	71	21	88	66	0	24	9	1.21
277094--277200	42	2.5	42	93	3	180	64	0	25	10	1.25
277304--277345	21	2.0	21	81	9	50	64	0	26	9	1.24
278638--278670	17	1.9	17	88	11	50	24	0	9	66	1.20
278846--278986	50	2.8	51	78	10	155	36	14	12	36	1.83
280751--280830	38	2.1	38	86	6	110	36	30	11	22	1.89
309414--309465	21	2.5	21	100	0	104	25	38	5	30	1.79
309495--309538	21	2.0	22	82	4	54	29	31	13	25	1.94
309997--310072	25	3.1	25	80	3	91	39	22	15	22	1.92
310003--310192	24	7.9	24	85	4	204	29	22	21	26	1.99
310190--310304	27	4.3	27	90	0	167	37	23	15	23	1.93
310712--310753	16	2.7	15	82	13	50	30	19	0	50	1.48
310722--310753	16	2.0	16	93	0	55	28	18	0	53	1.45
317626--317688	3	20.7	3	93	3	108	31	0	1	66	1.01
318747--318794	23	2.2	22	82	17	57	2	35	0	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322702--322984	61	4.8	61	86	7	384	35	10	17	36	1.84
322900--323023	60	2.0	61	87	1	178	32	12	18	37	1.88
322693--322984	115	2.5	121	88	3	434	35	10	17	36	1.84
323678--323735	21	2.8	21	86	0	71	25	15	24	34	1.95
328575--328631	29	2.0	29	92	0	96	50	12	3	33	1.57
335430--335467	19	2.0	20	84	5	51	60	23	0	15	1.35
335466--335503	16	2.4	16	86	4	51	42	2	13	42	1.57
342364--342478	22	5.1	22	75	13	108	13	24	23	38	1.91
342364--342478	44	2.5	46	83	6	128	13	24	23	38	1.91
342369--342531	23	7.1	23	77	11	129	13	26	22	38	1.91
342397--342535	23	6.0	23	77	8	131	14	26	21	37	1.92
342412--342530	48	2.5	46	85	8	143	13	28	21	36	1.91
342412--342557	48	3.1	48	82	9	142	14	28	19	37	1.91
347530--347579	21	2.4	21	80	6	57	44	36	14	6	1.69
348933--350774	906	2.0	906	92	0	3114	33	17	19	29	1.95

Tables:   1

The End!