genome.fa.s12022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012022.1 Kokia drynarioides strain JFW-HI SEQ_127020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86245

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209--288	30	2.6	29	81	13	81	30	0	5	65	1.14
249--292	21	2.1	21	91	0	70	31	0	4	63	1.14
356--419	31	2.0	32	82	8	78	45	4	1	48	1.32
526--575	27	2.0	26	84	11	68	26	32	12	30	1.92
3946--4042	32	3.2	32	60	16	78	50	23	7	18	1.71
3934--4060	60	2.1	60	98	0	245	52	20	7	19	1.69
7626--7691	4	16.2	4	81	9	71	66	0	33	0	0.92
7626--7690	25	2.6	25	78	2	78	67	0	32	0	0.91
11121--11159	21	1.9	21	89	5	62	30	15	35	17	1.91
11154--11290	45	3.0	45	82	0	166	20	19	27	32	1.97
13517--13552	13	2.8	13	91	4	56	0	22	0	77	0.76
18041--18066	9	2.9	9	100	0	52	34	0	11	53	1.37
25748--26431	341	2.0	341	98	0	1332	29	14	18	37	1.90
38548--38773	115	2.0	108	84	5	290	29	10	15	43	1.81
39706--40344	202	3.1	203	80	8	696	28	19	17	35	1.94
53796--53835	15	2.7	14	85	11	53	77	2	17	2	0.99
57927--57967	21	2.0	21	100	0	82	56	0	29	14	1.39
57930--57970	12	3.7	12	75	18	52	53	0	29	17	1.44
60326--60390	30	2.1	30	85	2	85	47	10	21	20	1.80
61278--61307	2	15.0	2	92	0	51	50	0	46	3	1.18
65608--65834	113	2.0	113	100	0	454	41	15	9	33	1.80
67511--67537	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73209--73233	10	2.5	10	100	0	50	92	0	8	0	0.40
74286--74365	29	2.6	30	86	5	99	46	12	7	33	1.70
77689--77720	3	10.7	3	100	0	64	34	0	0	65	0.93
77857--77891	18	1.9	18	88	0	52	45	5	5	42	1.51
78459--78563	20	5.3	20	74	13	74	42	18	2	36	1.65
78463--78568	39	2.7	39	81	5	124	44	17	2	34	1.64
78471--78616	20	7.3	20	74	4	98	43	15	4	37	1.65
78456--78613	40	4.0	39	76	9	124	41	16	4	37	1.68
80562--81098	58	9.3	59	80	10	435	34	4	27	33	1.77
80642--81098	29	15.8	28	73	15	292	34	3	28	34	1.74
80562--81108	29	18.9	28	70	18	182	34	4	27	33	1.77
84357--84414	14	4.2	13	76	22	57	41	3	0	55	1.17
85808--86245	168	2.6	168	91	3	681	27	27	16	28	1.97

Tables:   1

The End!