genome.fa.s12064.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012064.1 Kokia drynarioides strain JFW-HI SEQ_127062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91571

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747--782	11	3.4	11	88	3	56	55	0	0	44	0.99
2941--2965	7	3.6	7	100	0	50	56	28	0	16	1.41
10526--10555	7	4.3	7	100	0	60	30	56	0	13	1.37
13347--13375	3	9.7	3	100	0	58	34	0	0	65	0.93
14896--14937	18	2.3	18	100	0	84	50	19	4	26	1.67
27584--27629	22	2.0	22	83	8	56	60	8	15	15	1.57
34751--34797	24	2.0	23	84	12	60	12	19	4	63	1.44
40781--40825	19	2.4	19	81	7	56	37	0	4	57	1.19
41637--41687	21	2.5	21	93	3	86	13	9	3	72	1.24
43616--43660	19	2.4	19	81	7	56	37	0	4	57	1.19
44466--44518	21	2.6	20	82	11	63	15	11	3	69	1.31
54182--54376	29	6.6	28	68	19	96	38	4	27	29	1.75
54155--54394	29	8.2	28	70	17	93	37	4	27	30	1.76
54183--54343	61	2.7	59	86	6	229	38	3	27	31	1.72
55315--55345	3	10.3	3	100	0	62	32	0	0	67	0.91
55989--56070	6	14.2	6	74	12	55	54	4	0	40	1.22
56008--56098	34	2.7	34	81	10	105	57	6	0	36	1.25
56017--56097	17	4.8	17	76	11	85	58	7	0	34	1.26
56558--56806	49	5.1	49	84	3	324	14	24	21	40	1.90
56467--56802	97	3.5	97	84	3	383	16	23	20	40	1.91
61248--62135	99	9.1	100	72	10	455	40	18	24	16	1.91
61311--61568	49	5.2	50	66	10	152	39	18	25	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61732--61921	50	3.8	49	70	8	134	41	18	25	14	1.89
61741--62109	146	2.5	147	84	2	474	39	18	26	15	1.90
61745--62100	49	7.2	49	69	9	206	40	18	26	15	1.90
65733--65932	29	6.9	29	74	8	138	32	4	26	37	1.76
65733--65962	58	3.9	59	76	7	159	31	3	26	38	1.75
65811--65993	58	3.2	56	80	9	197	30	2	26	40	1.68
65744--65970	30	7.8	30	76	10	147	31	3	25	39	1.72
65832--66005	29	6.0	28	78	11	136	31	2	27	38	1.71
67079--67113	3	12.0	3	87	6	54	28	0	2	68	1.04
67788--67863	23	3.1	23	69	20	64	55	2	1	40	1.22
67792--67863	17	4.3	16	81	8	90	55	2	1	40	1.23
68168--69026	209	4.1	210	89	3	1275	22	23	18	35	1.96
68828--69197	172	2.2	171	97	1	688	21	24	18	35	1.95
68619--69406	380	2.1	381	94	1	1368	21	24	18	35	1.96
68410--69613	589	2.0	590	93	1	2029	22	24	18	34	1.96
69000--69824	209	4.0	209	92	0	1400	21	24	18	35	1.96
68205--69996	798	2.2	799	95	1	3180	22	24	18	35	1.96
69626--70120	172	2.9	172	92	0	801	21	23	18	36	1.95
70705--70764	17	3.6	16	80	8	75	53	5	1	40	1.33
74606--74685	29	2.8	29	84	9	101	28	10	30	31	1.89
74625--74687	29	2.2	29	94	2	110	26	11	31	30	1.91
74761--74866	29	3.7	28	77	8	97	41	1	21	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74729--74868	59	2.3	59	84	7	167	42	2	21	32	1.67
74789--74894	30	3.5	31	77	8	112	39	0	21	37	1.60
74729--74901	59	2.9	59	81	6	161	39	3	23	34	1.72
76005--76043	20	2.0	20	84	0	51	41	0	0	58	0.98
76917--76959	11	3.7	11	78	9	50	48	2	2	46	1.27
76897--77009	17	6.4	17	75	12	95	52	2	1	43	1.25
76917--76960	6	7.5	6	82	5	54	47	2	2	47	1.27
77955--78198	49	4.9	49	76	9	163	14	27	20	37	1.92
78004--78300	50	6.0	49	73	14	259	14	27	20	37	1.92
77895--78298	149	2.7	149	87	0	556	14	26	20	38	1.91
77979--78299	100	3.2	98	77	9	305	14	27	19	38	1.91
82822--82864	18	2.3	19	80	4	52	4	34	2	58	1.32
86046--86081	10	3.6	10	92	0	63	41	11	27	19	1.85
89803--89967	29	5.6	30	70	11	74	39	3	26	30	1.73
89803--89969	58	2.9	58	81	3	183	38	3	26	31	1.73
91205--91253	24	2.0	24	84	0	62	36	0	0	63	0.95

Tables:   1

The End!