genome.fa.s12135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012135.1 Kokia drynarioides strain JFW-HI SEQ_127134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65616

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15837--16412	200	2.9	200	92	0	927	36	18	24	21	1.95
16766--16840	11	7.1	11	73	21	54	41	1	1	56	1.16
16785--16840	11	4.9	11	82	10	60	39	1	1	57	1.20
16764--16842	6	13.5	6	75	14	76	44	1	1	53	1.16
16749--16842	17	5.4	17	87	5	125	42	1	2	54	1.19
16780--16828	23	2.1	23	88	7	73	42	0	2	55	1.11
16749--16860	35	3.2	34	83	3	125	44	1	1	51	1.22
18631--19124	59	8.4	59	88	2	697	32	31	4	31	1.76
18631--19124	119	4.2	118	88	3	708	32	31	4	31	1.76
18631--19124	178	2.8	176	89	3	715	32	31	4	31	1.76
20460--21170	379	1.9	380	78	6	787	29	17	13	40	1.87
21373--22499	378	3.0	372	81	5	1169	29	17	13	39	1.88
23192--24047	378	2.3	379	80	4	920	29	17	13	39	1.87
24240--24319	6	13.2	6	69	20	51	53	1	3	41	1.27
24226--24319	17	5.3	17	75	16	84	53	2	3	41	1.29
24226--24319	38	2.7	34	80	15	102	53	2	3	41	1.29
26786--26961	97	1.8	97	80	4	212	40	13	17	28	1.87
27228--27306	30	2.7	31	81	14	89	41	5	21	31	1.75
27287--27419	29	4.6	29	65	13	76	38	3	25	33	1.71
27150--27421	89	3.1	87	78	9	241	36	5	26	31	1.79
28544--28598	12	4.5	12	78	15	51	32	5	0	61	1.19
28556--28598	6	7.2	6	79	10	52	32	4	0	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28556--28598	9	4.8	9	80	11	52	32	4	0	62	1.15
32640--34126	378	3.9	379	83	4	1565	30	16	13	39	1.87
34215--35011	432	1.8	430	82	4	1021	36	14	14	33	1.87
37890--39099	378	3.3	377	83	6	1541	31	15	14	38	1.88
37397--39099	734	2.3	725	83	4	2017	30	16	14	38	1.88
38340--39025	356	1.9	355	90	1	1088	30	16	14	38	1.88
40296--40347	23	2.3	23	96	0	95	25	23	23	28	1.99
41798--41918	59	2.1	59	100	0	242	21	9	38	29	1.86
42012--42074	15	3.6	17	78	18	60	66	1	6	25	1.24
46498--46551	23	2.3	23	87	0	81	22	24	24	29	1.99
50499--50590	45	2.0	45	95	0	166	31	18	23	26	1.97
59826--60903	379	2.8	372	82	4	1167	29	16	13	40	1.87
61600--62581	379	2.6	378	82	4	1082	30	16	13	39	1.87
63979--64098	60	2.0	60	100	0	240	30	11	21	36	1.89

Tables:   1

The End!