genome.fa.s12152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012152.1 Kokia drynarioides strain JFW-HI SEQ_127151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458257

Tables:   1   2   

This is table  1  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8453--8495	21	2.2	19	83	8	50	23	9	9	58	1.58
17261--17325	32	2.0	32	96	0	121	18	13	9	58	1.61
25773--25801	15	1.9	15	100	0	58	27	27	24	20	1.99
26568--26644	38	2.0	38	97	0	145	36	25	16	20	1.94
26764--26810	24	1.9	25	87	12	71	74	0	19	6	1.03
30850--30920	21	3.2	21	69	18	63	35	22	12	29	1.91
32293--32323	16	1.9	16	93	0	53	38	19	9	32	1.84
37424--37459	18	1.9	19	88	5	56	69	5	2	22	1.22
37431--37477	20	2.4	19	76	16	51	74	4	0	21	0.99
41539--41595	16	3.4	16	73	17	62	57	17	10	14	1.64
41532--41610	34	2.3	34	100	0	158	54	17	12	15	1.71
41555--41610	18	3.2	18	71	19	64	57	19	10	12	1.64
53222--53339	20	5.9	20	87	0	155	8	33	21	37	1.83
53222--53338	60	2.0	60	91	0	189	8	32	21	37	1.84
53828--54052	71	3.2	71	83	1	254	32	14	23	29	1.94
55344--55432	27	3.3	27	85	0	115	47	8	17	25	1.77
57718--57782	28	2.2	29	83	5	78	40	1	3	55	1.25
57663--57782	9	12.6	9	68	14	53	38	2	2	56	1.26
59517--59546	12	2.5	12	100	0	60	16	6	0	76	0.99
64508--64542	12	3.0	11	88	12	52	11	8	2	77	1.10
72276--72534	128	2.0	128	100	0	518	32	17	16	33	1.93
72833--72879	19	2.5	19	85	0	58	76	4	0	19	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72851--72913	21	3.0	21	76	6	65	71	15	0	12	1.15
72851--72984	53	2.5	53	79	9	148	71	15	0	11	1.18
72946--72999	18	2.7	19	80	13	65	74	18	0	7	1.05
72966--73042	27	2.8	26	76	18	77	74	15	1	9	1.14
76892--76921	15	2.0	15	93	0	51	43	3	0	53	1.17
81393--81469	20	3.8	20	85	3	82	36	6	7	49	1.58
81432--81473	11	3.8	11	78	12	50	40	4	2	52	1.35
83638--83692	20	2.8	20	88	0	74	34	3	12	49	1.59
86351--86416	26	2.6	26	87	2	89	28	24	18	28	1.98
86618--86714	47	2.1	47	98	0	185	31	23	7	37	1.82
98227--98268	21	2.0	21	85	0	57	11	19	19	50	1.78
119160--119195	2	18.5	2	94	5	65	52	0	0	47	1.00
119918--119972	15	3.9	15	75	18	64	27	0	0	72	0.85
119917--119973	26	2.2	26	96	0	105	26	0	0	73	0.83
120143--120203	31	2.0	31	86	0	86	29	22	8	39	1.83
124811--124855	16	2.8	17	75	18	51	0	35	0	64	0.94
128700--128751	26	2.0	26	84	0	68	32	0	7	59	1.26
128907--129001	16	6.1	16	78	9	97	17	0	28	53	1.44
128911--129001	31	2.9	30	77	9	94	17	0	29	52	1.45
128912--129001	47	1.9	47	86	4	128	16	0	30	53	1.44
128938--129021	15	5.9	14	75	9	55	16	1	30	51	1.53
132014--132108	47	2.0	47	87	4	138	49	10	6	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132151--132301	47	3.3	47	91	1	234	35	9	9	45	1.70
141146--141228	28	3.0	28	89	0	112	37	21	15	25	1.93
149296--149357	18	3.3	18	81	6	70	9	29	11	50	1.70
149308--149363	21	2.7	21	85	0	76	7	30	8	53	1.59
150801--150839	15	2.5	15	87	4	60	76	2	2	17	1.01
154996--155035	21	1.9	21	85	10	55	17	7	32	42	1.77
157349--157399	15	3.3	15	76	15	50	21	3	1	72	1.11
157746--157945	109	1.8	110	86	4	296	29	11	16	43	1.82
160674--160729	27	2.1	27	89	0	85	37	17	17	26	1.93
162082--162125	9	4.8	9	78	15	54	84	0	13	2	0.73
163050--163281	48	4.8	48	74	7	184	34	18	17	28	1.94
163056--163322	95	2.8	96	81	4	295	33	18	19	28	1.95
163383--163919	39	13.1	42	73	16	346	31	27	17	24	1.97
163344--163766	81	5.2	81	87	1	580	30	28	16	24	1.96
163778--163835	30	1.9	30	100	0	116	29	27	20	22	1.99
163736--163880	76	1.9	75	94	1	254	32	27	16	23	1.96
163808--163919	45	2.5	46	86	1	172	33	25	17	23	1.97
165713--165924	109	1.9	110	87	4	313	29	12	16	41	1.85
168144--168197	26	2.1	26	89	0	81	31	24	20	24	1.98
168201--168274	38	2.0	38	83	2	96	32	9	24	33	1.87
171726--171756	16	1.9	16	93	0	53	61	0	16	22	1.34
172556--172608	26	2.0	26	88	0	79	30	18	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172712--172795	37	2.3	37	82	0	114	23	16	30	28	1.96
176760--176816	28	2.0	28	86	0	78	40	24	14	21	1.90
178669--178720	22	2.3	23	90	6	81	40	13	26	19	1.88
179369--179393	11	2.3	11	100	0	50	44	8	0	48	1.32
181425--181700	26	10.9	26	71	14	175	26	26	16	30	1.97
181401--181771	149	2.5	149	88	3	557	28	25	15	30	1.96
203884--204006	24	5.1	24	84	0	75	29	20	21	28	1.98
203901--204009	48	2.3	48	90	0	164	28	20	22	29	1.98
206999--207057	15	3.6	17	75	15	54	66	1	32	0	1.02
207003--207061	12	4.9	12	70	13	50	67	1	30	0	1.00
207975--208011	2	19.5	2	89	10	60	51	0	0	48	1.00
223882--223913	7	4.7	7	92	7	57	71	0	0	28	0.86
232544--232600	27	2.2	27	87	9	84	52	8	3	35	1.50
233205--233241	17	2.1	18	90	5	58	56	8	10	24	1.60
236083--236114	3	10.7	3	100	0	64	0	34	0	65	0.93
237682--237718	19	2.0	18	89	5	56	67	5	2	24	1.25
244830--245932	551	2.0	550	87	0	1589	33	16	21	28	1.95
250261--250301	18	2.3	18	87	8	57	51	7	29	12	1.66
265252--265371	56	2.2	56	92	1	206	20	30	1	47	1.60
272202--272250	23	2.2	23	85	10	66	36	10	4	48	1.56
272277--272309	13	2.4	14	85	5	50	51	6	9	33	1.58
276365--276425	23	2.9	21	79	18	65	59	3	1	36	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276367--276425	20	2.9	22	78	21	65	59	3	1	35	1.24
278768--278989	84	2.6	84	88	0	327	22	25	10	41	1.85
278768--278987	28	7.8	28	89	0	278	21	25	10	41	1.85
283948--284023	11	7.6	11	78	16	78	46	1	0	52	1.08
283948--284015	9	7.1	9	81	18	68	47	0	0	52	1.00
283948--284023	20	3.9	20	79	19	97	46	1	0	52	1.08
285900--285946	24	2.0	23	87	8	67	21	6	0	72	1.07
292685--292723	18	2.2	18	85	0	51	66	10	7	15	1.43
295499--295528	3	10.0	3	100	0	60	66	0	33	0	0.92
296219--296474	28	9.1	28	86	3	291	42	10	25	21	1.84
297713--297750	18	2.1	18	95	0	67	28	13	34	23	1.92
309612--309671	27	2.3	26	91	5	102	46	10	21	21	1.80
309810--309927	46	2.5	46	86	1	155	28	13	21	36	1.91
310042--310099	31	1.9	31	86	10	84	8	18	24	48	1.76
310047--310109	31	2.0	31	81	6	74	11	19	22	47	1.80
310441--310469	13	2.2	13	100	0	58	20	20	27	31	1.98
316238--316286	21	2.3	20	80	16	55	55	6	20	18	1.64
321445--321490	18	2.5	19	86	10	69	23	30	0	45	1.53
325532--325572	21	2.0	21	85	9	57	2	34	4	58	1.32
335555--335603	25	2.0	25	88	8	73	38	0	12	48	1.41
341721--341771	25	2.0	25	88	7	77	35	3	11	49	1.58
351333--351375	20	2.2	20	91	0	68	79	2	0	18	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353030--353127	26	3.8	25	79	5	97	29	18	20	31	1.96
353036--353158	26	4.7	26	81	2	95	27	21	17	33	1.96
353028--353158	52	2.5	52	80	7	133	26	20	19	33	1.96
359934--360025	26	3.5	26	86	0	121	25	18	25	31	1.98
360009--360077	26	2.7	26	84	2	86	20	14	30	34	1.92
362460--362538	26	3.0	26	87	10	117	26	22	20	30	1.98
365536--365902	123	3.0	122	88	2	515	43	8	9	38	1.68
370083--370118	18	2.0	18	88	0	54	66	5	5	22	1.34
382266--382307	15	2.9	15	75	3	50	78	0	4	16	0.91
388212--388250	19	2.0	21	85	10	55	53	2	17	25	1.56

Tables:   1   2