genome.fa.s12188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012188.1 Kokia drynarioides strain JFW-HI SEQ_127189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123627

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944--2992	19	2.8	17	74	14	55	63	0	2	34	1.06
4982--5060	41	2.0	40	87	2	113	44	11	20	24	1.84
7208--7241	18	1.9	18	88	5	52	67	0	26	5	1.13
7211--7274	25	2.4	27	80	12	80	71	0	21	6	1.07
10523--10588	33	2.0	33	100	0	132	18	27	12	42	1.85
10582--10606	4	6.2	4	100	0	50	0	24	0	76	0.80
17333--17379	21	2.3	21	85	7	62	23	2	12	61	1.42
20959--21041	38	2.2	38	78	6	87	46	2	1	49	1.22
26215--26291	39	2.0	39	94	0	136	29	14	27	28	1.95
30677--30741	24	2.7	24	87	0	85	56	6	7	29	1.51
30697--30752	24	2.4	24	87	3	78	57	8	8	25	1.58
42857--42905	25	2.0	25	84	8	64	24	8	2	65	1.31
47055--47113	17	3.4	17	76	17	66	61	5	1	32	1.28
47059--47112	19	2.9	19	76	15	51	59	5	1	33	1.31
54610--54651	21	2.0	21	81	9	50	33	42	0	23	1.55
57589--57697	39	2.8	39	79	6	105	39	16	15	28	1.89
57643--57741	39	2.5	39	81	0	108	38	21	16	24	1.93
58358--58407	24	2.1	24	84	0	64	24	30	18	28	1.97
58391--58524	24	5.5	24	81	1	133	21	28	14	35	1.93
58409--58502	49	1.9	49	95	0	170	19	28	15	36	1.93
62182--62494	158	2.0	158	86	2	441	23	23	23	30	1.99
63246--63301	21	2.7	21	83	5	60	28	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75509--75547	20	2.0	20	85	10	53	33	10	2	53	1.48
79777--79809	6	5.8	6	86	13	52	87	0	12	0	0.53
79771--79810	16	2.7	15	85	11	55	87	0	12	0	0.54
80687--80746	11	5.4	11	80	7	59	83	0	11	5	0.80
80668--80746	12	6.6	11	72	16	68	82	0	12	5	0.83
80667--80748	37	2.4	35	82	11	98	81	0	13	4	0.84
81686--82521	189	4.4	191	78	6	785	33	16	24	24	1.96
81686--82492	378	2.1	377	80	3	929	34	16	24	24	1.95
82421--82630	93	2.3	93	94	0	366	33	15	28	21	1.94
82091--82961	469	1.9	469	82	3	1115	34	15	25	24	1.95
82221--82743	280	1.9	281	84	2	710	33	17	25	24	1.96
82503--86075	187	19.0	185	79	5	3100	32	15	25	25	1.96
81875--83179	658	2.0	658	82	2	1598	33	16	24	25	1.96
82503--86075	376	9.5	374	78	5	3117	32	15	25	25	1.96
86080--88010	189	10.3	187	79	4	1657	32	16	25	26	1.96
86144--88010	376	5.0	374	78	6	1562	32	16	25	25	1.96
87979--88057	39	2.0	39	82	0	95	30	18	25	25	1.98
87786--88236	226	2.0	226	91	0	724	31	16	26	26	1.96
88012--97047	189	48.2	189	77	5	7105	33	15	25	25	1.95
88739--89053	93	3.4	93	69	15	254	31	14	26	26	1.95
88012--97043	376	24.1	375	78	5	7155	33	15	25	25	1.95
93416--94106	93	7.4	92	67	14	374	31	15	26	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95854--96170	94	3.4	94	68	17	246	32	14	26	26	1.95
96918--97172	128	2.0	129	85	5	347	32	19	24	23	1.98
97204--97410	93	2.2	93	82	3	263	32	16	23	26	1.96
97672--98356	92	7.4	92	71	11	412	33	16	24	25	1.96
97308--100552	189	17.4	188	78	5	2666	34	16	24	25	1.95
97289--100597	376	8.9	374	78	6	2740	33	16	24	25	1.95
99632--99938	94	3.3	94	69	16	249	30	15	26	26	1.96
100190--100507	94	3.4	93	69	10	241	33	17	25	22	1.96
100341--100868	282	1.9	283	84	4	724	33	15	26	25	1.95
100568--101673	187	5.9	188	75	7	972	31	17	25	25	1.97
100275--100868	95	6.3	93	70	11	302	32	16	25	24	1.96
100112--101021	471	1.9	471	85	1	1243	32	16	25	25	1.96
100563--101555	376	2.6	373	81	6	1126	32	17	25	25	1.97
101784--102239	123	3.7	122	80	7	502	30	28	16	24	1.97
101782--102239	204	2.3	204	84	4	588	30	28	16	24	1.97
101782--102239	81	5.6	80	78	7	433	30	28	16	24	1.97
106010--106171	24	6.8	24	89	0	225	26	21	22	29	1.99
105996--106164	72	2.3	72	90	0	266	27	20	21	29	1.98
111559--111610	25	2.1	25	85	7	70	48	34	7	9	1.65
111682--111722	13	3.2	13	82	0	55	14	19	21	43	1.87
118846--118877	15	2.1	16	94	5	57	12	21	0	65	1.25
123187--123247	29	2.2	26	82	8	68	24	0	8	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123393--123449	6	10.0	6	75	17	59	43	1	0	54	1.10
123359--123445	22	3.9	22	81	17	99	41	1	2	55	1.20
123391--123447	11	5.1	11	86	2	78	42	1	0	56	1.10
123424--123465	18	2.4	18	88	4	59	47	2	0	50	1.14

Tables:   1

The End!