genome.fa.s12245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012245.1 Kokia drynarioides strain JFW-HI SEQ_127246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71500

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2814--2899	20	4.2	19	68	12	55	41	4	0	53	1.21
4655--4714	31	1.9	31	100	0	120	50	11	6	31	1.65
5518--5542	2	12.5	2	100	0	50	0	0	48	52	1.00
10136--10212	38	2.0	38	97	0	145	24	27	12	35	1.92
11361--11652	30	9.9	29	76	11	220	39	3	23	34	1.72
11361--11652	59	4.9	57	75	12	209	39	3	23	34	1.72
11508--11681	30	5.9	29	82	6	138	36	2	22	39	1.67
12579--12662	3	28.0	3	100	0	168	33	0	0	66	0.92
13330--13368	17	2.4	17	91	4	62	56	2	0	41	1.13
13943--14161	39	5.6	39	75	7	167	26	20	30	23	1.98
14018--14207	78	2.4	78	80	1	229	23	18	34	24	1.96
14307--14368	7	8.7	7	77	10	63	4	14	0	80	0.87
14332--14376	5	9.4	5	83	13	51	2	15	0	82	0.77
14330--14373	22	2.0	23	90	4	72	2	13	0	84	0.73
14318--14376	29	2.1	29	93	3	102	3	15	0	81	0.82
19268--19612	60	5.8	59	78	9	292	37	3	23	35	1.71
19279--19612	90	3.7	91	79	10	291	37	2	23	36	1.70
19267--19611	30	11.6	29	76	11	245	37	3	23	35	1.71
20506--20544	3	13.0	3	100	0	78	33	0	0	66	0.92
21211--21251	6	7.0	6	86	5	57	53	2	0	43	1.13
21213--21245	11	2.8	12	90	4	50	57	0	0	42	0.98
21219--21259	17	2.4	17	95	0	73	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22388--22419	14	2.3	14	94	0	55	81	3	0	15	0.82
22776--22800	13	1.9	13	100	0	50	80	4	0	16	0.87
31784--31834	27	1.9	26	88	4	75	31	0	0	68	0.90
32455--32578	63	2.0	63	98	0	239	30	23	19	26	1.98
35379--35430	15	3.6	14	74	7	50	53	5	7	32	1.53
50981--51116	36	3.8	36	90	1	202	41	25	11	21	1.87
50981--51115	71	1.9	72	89	1	209	41	25	11	21	1.87
52392--52424	17	1.9	17	100	0	66	42	15	0	42	1.46
55023--55065	22	1.9	23	85	4	61	65	25	2	6	1.30
60065--60213	3	49.7	3	98	0	289	0	0	32	67	0.91
60212--60240	3	9.7	3	100	0	58	31	0	0	68	0.89
61515--61837	89	3.7	87	72	9	262	37	2	24	34	1.70
61683--61849	59	2.8	60	78	5	178	41	2	21	34	1.66
61510--61868	30	12.1	29	73	10	221	37	2	24	35	1.69
62087--62175	36	2.5	36	96	0	160	25	16	23	33	1.96
62307--62361	18	3.2	18	82	5	60	10	45	21	21	1.82
62472--62517	24	1.9	24	82	8	58	13	13	8	65	1.48
62583--62617	16	2.1	17	94	5	63	40	0	11	48	1.39
63641--63759	48	2.5	48	91	0	193	23	23	15	37	1.93
63511--63837	171	1.9	172	84	0	440	23	22	16	37	1.93
63802--63966	85	1.9	85	81	2	197	26	21	13	38	1.90
63683--64322	208	3.1	208	85	5	756	25	22	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64473--65091	49	12.6	49	77	5	442	19	29	15	34	1.93
64466--65090	148	4.2	147	78	5	503	19	29	16	34	1.93
64622--65086	99	4.7	98	80	2	432	19	29	16	34	1.94
64622--65086	198	2.4	197	81	3	515	19	29	16	34	1.94
66130--66202	33	2.2	32	83	7	85	6	13	0	79	0.92
66153--66210	26	2.3	24	80	13	71	8	10	0	81	0.89
66159--66212	25	2.2	24	83	9	65	9	11	0	79	0.93

Tables:   1

The End!