genome.fa.s12264.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012264.1 Kokia drynarioides strain JFW-HI SEQ_127265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37146

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3381--3538	43	3.7	43	83	1	192	32	24	14	29	1.94
7587--7639	22	2.3	24	84	12	76	39	18	22	18	1.92
11546--11586	21	2.0	20	90	4	64	48	4	2	43	1.37
11831--11860	16	1.9	16	93	6	53	16	0	43	40	1.48
13248--13581	42	8.1	42	78	4	313	18	25	14	41	1.89
13262--13540	82	3.4	82	76	6	244	19	24	14	41	1.89
13255--13619	42	8.9	40	76	7	229	19	24	13	42	1.87
13255--13705	204	2.2	202	79	4	453	19	22	15	42	1.88
13248--13705	40	11.2	40	74	9	227	18	22	15	42	1.89
15753--16008	59	4.4	58	79	11	256	39	5	25	30	1.77
15753--16008	118	2.2	118	81	9	285	39	5	25	30	1.77
15753--16037	58	4.9	58	77	12	244	39	4	25	30	1.76
15955--16062	30	3.7	27	74	16	74	42	3	21	32	1.70
15869--16153	58	4.9	59	80	10	230	40	2	24	32	1.70
15985--16153	59	2.9	57	83	5	196	40	1	24	34	1.63
15845--16158	29	10.8	29	68	16	134	39	2	25	32	1.69
17210--17401	3	64.0	3	81	6	219	33	1	3	61	1.21
18089--18147	6	10.2	6	71	14	52	54	1	3	40	1.27
18099--18178	17	4.5	18	77	10	76	52	5	3	38	1.41
18098--18178	36	2.3	35	83	10	94	51	4	3	39	1.41
18616--19057	49	9.0	49	72	11	350	16	26	19	37	1.93
18616--19102	97	5.0	97	87	2	670	16	26	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23516--23558	18	2.3	19	80	4	52	4	34	2	58	1.32
27323--27363	16	2.6	16	100	0	82	12	17	17	53	1.72
30491--30780	59	5.0	57	75	7	244	35	5	28	29	1.81
30613--30848	29	8.1	29	69	16	132	37	2	27	31	1.72
31893--31998	3	35.0	3	77	9	99	33	2	2	61	1.25
32626--32668	14	3.0	14	86	10	52	25	9	13	51	1.71
34466--34522	28	2.1	28	81	15	68	49	1	1	47	1.22

Tables:   1

The End!